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2013 2
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Page 1
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, Roy RS, Quadir F, Liu J, Cheng J, Antoniak A, Czaplewski C, Giełdoń A, Kogut M, Lipska AG, Liwo A, Lubecka EA, Maszota-Zieleniak M, Sieradzan AK, Ślusarz R, Wesołowski PA, Zięba K, Del Carpio Muñoz CA, Ichiishi E, Harmalkar A, Gray JJ, Bonvin AMJJ, Ambrosetti F, Vargas Honorato R, Jandova Z, Jiménez-García B, Koukos PI, Van Keulen S, Van Noort CW, Réau M, Roel-Touris J, Kotelnikov S, Padhorny D, Porter KA, Alekseenko A, Ignatov M, Desta I, Ashizawa R, Sun Z, Ghani U, Hashemi N, Vajda S, Kozakov D, Rosell M, Rodríguez-Lumbreras LA, Fernandez-Recio J, Karczynska A, Grudinin S, Yan Y, Li H, Lin P, Huang SY, Christoffer C, Terashi G, Verburgt J, Sarkar D, Aderinwale T, Wang X, Kihara D, Nakamura T, Hanazono Y, Gowthaman R, Guest JD, Yin R, Taherzadeh G, Pierce BG, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Sun Y, Zhu S, Shen Y, Park T, Woo H, Yang J, Kwon S, Won J, Seok C, Kiyota Y, Kobayashi S, Harada Y, Takeda-Shitaka M, Kundrotas PJ, Singh A, Vakser IA, Dapkūnas J, Olechnovič K, Venclovas Č, Duan R, Qiu L, Xu X, Zhang S, Zou X,… See abstract for full author list ➔ Lensink MF, et al. Among authors: vargas honorato r. Proteins. 2021 Dec;89(12):1800-1823. doi: 10.1002/prot.26222. Epub 2021 Sep 13. Proteins. 2021. PMID: 34453465 Free PMC article.
Structural basis of exo-β-mannanase activity in the GH2 family.
Domingues MN, Souza FHM, Vieira PS, de Morais MAB, Zanphorlin LM, Dos Santos CR, Pirolla RAS, Honorato RV, de Oliveira PSL, Gozzo FC, Murakami MT. Domingues MN, et al. Among authors: honorato rv. J Biol Chem. 2018 Aug 31;293(35):13636-13649. doi: 10.1074/jbc.RA118.002374. Epub 2018 Jul 11. J Biol Chem. 2018. PMID: 29997257 Free PMC article.
Pyrrole-indolinone SU11652 targets the nucleoside diphosphate kinase from Leishmania parasites.
Vieira PS, Souza TACB, Honorato RV, Zanphorlin LM, Severiano KU, Rocco SA, de Oliveira AHC, Cordeiro AT, Oliveira PSL, de Giuseppe PO, Murakami MT. Vieira PS, et al. Among authors: honorato rv. Biochem Biophys Res Commun. 2017 Jul 1;488(3):461-465. doi: 10.1016/j.bbrc.2017.05.048. Epub 2017 May 9. Biochem Biophys Res Commun. 2017. PMID: 28499874
Molecular mechanisms associated with xylan degradation by Xanthomonas plant pathogens.
Santos CR, Hoffmam ZB, de Matos Martins VP, Zanphorlin LM, de Paula Assis LH, Honorato RV, Lopes de Oliveira PS, Ruller R, Murakami MT. Santos CR, et al. Among authors: honorato rv. J Biol Chem. 2014 Nov 14;289(46):32186-32200. doi: 10.1074/jbc.M114.605105. Epub 2014 Sep 29. J Biol Chem. 2014. PMID: 25266726 Free PMC article.
Negative regulation of bacterial killing and inflammation by two novel CD16 ligands.
Beppler J, Mkaddem SB, Michaloski J, Honorato RV, Velasco IT, de Oliveira PS, Giordano RJ, Monteiro RC, Pinheiro da Silva F. Beppler J, et al. Among authors: honorato rv. Eur J Immunol. 2016 Aug;46(8):1926-35. doi: 10.1002/eji.201546118. Epub 2016 Jun 13. Eur J Immunol. 2016. PMID: 27226142 Free article.
The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.
Dos Santos CR, de Giuseppe PO, de Souza FHM, Zanphorlin LM, Domingues MN, Pirolla RAS, Honorato RV, Tonoli CCC, de Morais MAB, de Matos Martins VP, Fonseca LM, Büchli F, de Oliveira PSL, Gozzo FC, Murakami MT. Dos Santos CR, et al. Among authors: honorato rv. Biotechnol Biofuels. 2018 Aug 11;11:223. doi: 10.1186/s13068-018-1212-y. eCollection 2018. Biotechnol Biofuels. 2018. PMID: 30127853 Free PMC article.
Active glutaminase C self-assembles into a supratetrameric oligomer that can be disrupted by an allosteric inhibitor.
Ferreira AP, Cassago A, Gonçalves Kde A, Dias MM, Adamoski D, Ascenção CF, Honorato RV, de Oliveira JF, Ferreira IM, Fornezari C, Bettini J, Oliveira PS, Paes Leme AF, Portugal RV, Ambrosio AL, Dias SM. Ferreira AP, et al. Among authors: honorato rv. J Biol Chem. 2013 Sep 27;288(39):28009-20. doi: 10.1074/jbc.M113.501346. Epub 2013 Aug 8. J Biol Chem. 2013. PMID: 23935106 Free PMC article.
Structural analysis of intermolecular interactions in the kinesin adaptor complex fasciculation and elongation protein zeta 1/ short coiled-coil protein (FEZ1/SCOCO).
Alborghetti MR, Furlan Ada S, da Silva JC, Sforça ML, Honorato RV, Granato DC, dos Santos Migueleti DL, Neves JL, de Oliveira PS, Paes-Leme AF, Zeri AC, de Torriani IC, Kobarg J. Alborghetti MR, et al. Among authors: honorato rv. PLoS One. 2013 Oct 7;8(10):e76602. doi: 10.1371/journal.pone.0076602. eCollection 2013. PLoS One. 2013. PMID: 24116125 Free PMC article.