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MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.
Rocha U, Coelho Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Štefanič P, Bicalho MF, Borim Correa F, Baştürk MN, Fousekis E, Viana Barbosa LM, Plewka J, Probst AJ, Baldrian P, Stadler PF; CLUE-TERRA Consortium. Rocha U, et al. Among authors: toscan rb. Mol Ecol Resour. 2024 Feb;24(2):e13904. doi: 10.1111/1755-0998.13904. Epub 2023 Nov 23. Mol Ecol Resour. 2024. PMID: 37994269
Draft Genome Sequences of Two Sphingobium Species Associated with Hexachlorocyclohexane (HCH) Degradation Isolated from an HCH-Contaminated Soil.
Khan N, Brizola Toscan R, Lunayo A, Wamalwa B, Muge E, Mulaa FJ, Kallies R, Harms H, Wick LY, Nunes da Rocha U. Khan N, et al. Among authors: brizola toscan r. Microbiol Resour Announc. 2022 Mar 17;11(3):e0088621. doi: 10.1128/mra.00886-21. Epub 2022 Feb 17. Microbiol Resour Announc. 2022. PMID: 35175098 Free PMC article.
Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa.
Magnúsdóttir S, Saraiva JP, Bartholomäus A, Soheili M, Toscan RB, Zhang J, Nunes da Rocha U; CLUE-TERRA consortium. Magnúsdóttir S, et al. Among authors: toscan rb. Front Microbiol. 2023 Jan 25;14:1037845. doi: 10.3389/fmicb.2023.1037845. eCollection 2023. Front Microbiol. 2023. PMID: 36760505 Free PMC article.