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PDBsum: Structural summaries of PDB entries.
Laskowski RA, Jabłońska J, Pravda L, Vařeková RS, Thornton JM. Laskowski RA, et al. Among authors: varekova rs. Protein Sci. 2018 Jan;27(1):129-134. doi: 10.1002/pro.3289. Epub 2017 Oct 27. Protein Sci. 2018. PMID: 28875543 Free PMC article.
ChannelsDB: database of biomacromolecular tunnels and pores.
Pravda L, Sehnal D, Svobodová Vareková R, Navrátilová V, Toušek D, Berka K, Otyepka M, Koca J. Pravda L, et al. Among authors: svobodova varekova r. Nucleic Acids Res. 2018 Jan 4;46(D1):D399-D405. doi: 10.1093/nar/gkx868. Nucleic Acids Res. 2018. PMID: 29036719 Free PMC article.
SugarSketcher: Quick and Intuitive Online Glycan Drawing.
Alocci D, Suchánková P, Costa R, Hory N, Mariethoz J, Vařeková RS, Toukach P, Lisacek F. Alocci D, et al. Among authors: varekova rs. Molecules. 2018 Dec 5;23(12):3206. doi: 10.3390/molecules23123206. Molecules. 2018. PMID: 30563078 Free PMC article.
Automated Family-Wide Annotation of Secondary Structure Elements.
Midlik A, Hutařová Vařeková I, Hutař J, Moturu TR, Navrátilová V, Koča J, Berka K, Svobodová Vařeková R. Midlik A, et al. Among authors: svobodova varekova r. Methods Mol Biol. 2019;1958:47-71. doi: 10.1007/978-1-4939-9161-7_3. Methods Mol Biol. 2019. PMID: 30945213
Anatomy of enzyme channels.
Pravda L, Berka K, Svobodová Vařeková R, Sehnal D, Banáš P, Laskowski RA, Koča J, Otyepka M. Pravda L, et al. Among authors: svobodova varekova r. BMC Bioinformatics. 2014 Nov 18;15(1):379. doi: 10.1186/s12859-014-0379-x. BMC Bioinformatics. 2014. PMID: 25403510 Free PMC article.
PDBe: improved findability of macromolecular structure data in the PDB.
Armstrong DR, Berrisford JM, Conroy MJ, Gutmanas A, Anyango S, Choudhary P, Clark AR, Dana JM, Deshpande M, Dunlop R, Gane P, Gáborová R, Gupta D, Haslam P, Koča J, Mak L, Mir S, Mukhopadhyay A, Nadzirin N, Nair S, Paysan-Lafosse T, Pravda L, Sehnal D, Salih O, Smart O, Tolchard J, Varadi M, Svobodova-Vařeková R, Zaki H, Kleywegt GJ, Velankar S. Armstrong DR, et al. Among authors: svobodova varekova r. Nucleic Acids Res. 2020 Jan 8;48(D1):D335-D343. doi: 10.1093/nar/gkz990. Nucleic Acids Res. 2020. PMID: 31691821 Free PMC article.
Worldwide Protein Data Bank validation information: usage and trends.
Smart OS, Horský V, Gore S, Svobodová Vařeková R, Bendová V, Kleywegt GJ, Velankar S. Smart OS, et al. Among authors: svobodova varekova r. Acta Crystallogr D Struct Biol. 2018 Mar 1;74(Pt 3):237-244. doi: 10.1107/S2059798318003303. Epub 2018 Mar 2. Acta Crystallogr D Struct Biol. 2018. PMID: 29533231 Free PMC article.
Validation of ligands in macromolecular structures determined by X-ray crystallography.
Smart OS, Horský V, Gore S, Svobodová Vařeková R, Bendová V, Kleywegt GJ, Velankar S. Smart OS, et al. Among authors: svobodova varekova r. Acta Crystallogr D Struct Biol. 2018 Mar 1;74(Pt 3):228-236. doi: 10.1107/S2059798318002541. Epub 2018 Mar 2. Acta Crystallogr D Struct Biol. 2018. PMID: 29533230 Free PMC article.
36 results