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BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.
Geistlinger L, Mirzayi C, Zohra F, Azhar R, Elsafoury S, Grieve C, Wokaty J, Gamboa-Tuz SD, Sengupta P, Hecht I, Ravikrishnan A, Gonçalves RS, Franzosa E, Raman K, Carey V, Dowd JB, Jones HE, Davis S, Segata N, Huttenhower C, Waldron L. Geistlinger L, et al. Among authors: sengupta p. Nat Biotechnol. 2023 Sep 11. doi: 10.1038/s41587-023-01872-y. Online ahead of print. Nat Biotechnol. 2023. PMID: 37697152
Phylogenomics, phenotypic, and functional traits of five novel (Earth-derived) bacterial species isolated from the International Space Station and their prevalence in metagenomes.
Simpson AC, Sengupta P, Zhang F, Hameed A, Parker CW, Singh NK, Miliotis G, Rekha PD, Raman K, Mason CE, Venkateswaran K. Simpson AC, et al. Among authors: sengupta p. Sci Rep. 2023 Nov 6;13(1):19207. doi: 10.1038/s41598-023-44172-w. Sci Rep. 2023. PMID: 37932283 Free PMC article.
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.
Miliotis G, Sengupta P, Hameed A, Chuvochina M, McDonagh F, Simpson AC, Parker CW, Singh NK, Rekha PD, Morris D, Raman K, Kyrpides NC, Hugenholtz P, Venkateswaran K. Miliotis G, et al. Among authors: sengupta p. mBio. 2024 Apr 10;15(4):e0018124. doi: 10.1128/mbio.00181-24. Epub 2024 Mar 13. mBio. 2024. PMID: 38477597 Free PMC article.