Optical observations of transient luminous events and remote-sensing of the lower ionosphere with low-frequency radio waves have demonstrated that thunderstorms and lightning can have substantial impacts in the nighttime ionospheric D region. However, it remains a challenge to quantify such effects in the daytime lower ionosphere. The wealth of electron density data acquired over the years by the Arecibo Observatory incoherent scatter radar (ISR) with high vertical spatial resolution (300-m in the present study), combined with its tropical location in a region of high lightning activity, indicate a potentially transformative pathway to address this issue. Through a systematic survey, we show that daytime sudden electron density changes registered by Arecibo's ISR during thunderstorm times are on average different than the ones happening during fair weather conditions (driven by other external factors). These changes typically correspond to electron density depletions in the D and E region. The survey also shows that these disturbances are different than the ones associated with solar flares, which tend to have longer duration and most often correspond to an increase in the local electron density content.