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Page 1
Intercellular interaction mechanisms promote diversity in intracellular ATP concentration in Escherichia coli populations.
Sci Rep. 2022 Oct 26;12(1):17946. doi: 10.1038/s41598-022-22189-x.
Sci Rep. 2022.
PMID: 36289258
Free PMC article.
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, Hiroi NF, Hu F, Pham N, Ehrhart F, Willighagen EL, Valdeolivas A, Dugourd A, Messina F, Esteban-Medina M, Peña-Chilet M, Rian K, Soliman S, Aghamiri SS, Puniya BL, Naldi A, Helikar T, Singh V, Fernández MF, Bermudez V, Tsirvouli E, Montagud A, Noël V, Ponce-de-Leon M, Maier D, Bauch A, Gyori BM, Bachman JA, Luna A, Piñero J, Furlong LI, Balaur I, Rougny A, Jarosz Y, Overall RW, Phair R, Perfetto L, Matthews L, Rex DAB, Orlic-Milacic M, Gomez LCM, De Meulder B, Ravel JM, Jassal B, Satagopam V, Wu G, Golebiewski M, Gawron P, Calzone L, Beckmann JS, Evelo CT, D'Eustachio P, Schreiber F, Saez-Rodriguez J, Dopazo J, Kuiper M, Valencia A, Wolkenhauer O, Kitano H, Barillot E, Auffray C, Balling R, Schneider R; COVID-19 Disease Map Community.
Niarakis A, et al. Among authors: hiroi nf.
Front Immunol. 2024 Feb 13;14:1282859. doi: 10.3389/fimmu.2023.1282859. eCollection 2023.
Front Immunol. 2024.
PMID: 38414974
Free PMC article.
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Predicting the future direction of cell movement with convolutional neural networks.
Nishimoto S, Tokuoka Y, Yamada TG, Hiroi NF, Funahashi A.
Nishimoto S, et al. Among authors: hiroi nf.
PLoS One. 2019 Sep 4;14(9):e0221245. doi: 10.1371/journal.pone.0221245. eCollection 2019.
PLoS One. 2019.
PMID: 31483827
Free PMC article.
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3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis.
Tokuoka Y, Yamada TG, Mashiko D, Ikeda Z, Hiroi NF, Kobayashi TJ, Yamagata K, Funahashi A.
Tokuoka Y, et al. Among authors: hiroi nf.
NPJ Syst Biol Appl. 2020 Oct 20;6(1):32. doi: 10.1038/s41540-020-00152-8.
NPJ Syst Biol Appl. 2020.
PMID: 33082352
Free PMC article.
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Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11.
Yamada TG, Hiki Y, Hiroi NF, Shagimardanova E, Gusev O, Cornette R, Kikawada T, Funahashi A.
Yamada TG, et al. Among authors: hiroi nf.
PLoS One. 2020 Mar 19;15(3):e0230218. doi: 10.1371/journal.pone.0230218. eCollection 2020.
PLoS One. 2020.
PMID: 32191739
Free PMC article.
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Switching from weak to strong cortical attachment of microtubules accounts for the transition from nuclear centration to spindle elongation in metazoans.
Tada S, Yamazaki Y, Yamamoto K, Fujii K, Yamada TG, Hiroi NF, Kimura A, Funahashi A.
Tada S, et al. Among authors: hiroi nf.
Heliyon. 2024 Feb 5;10(3):e25494. doi: 10.1016/j.heliyon.2024.e25494. eCollection 2024 Feb 15.
Heliyon. 2024.
PMID: 38356608
Free PMC article.
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