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Rapid Assessment of SARS-CoV-2 Variant-Associated Mutations in Wastewater Using Real-Time RT-PCR.
Farkas K, Pellett C, Williams R, Alex-Sanders N, Bassano I, Brown MR, Denise H, Grimsley JMS, Kevill JL, Khalifa MS, Pântea I, Story R, Wade MJ, Woodhall N, Jones DL. Farkas K, et al. Among authors: khalifa ms. Microbiol Spectr. 2023 Feb 14;11(1):e0317722. doi: 10.1128/spectrum.03177-22. Epub 2023 Jan 11. Microbiol Spectr. 2023. PMID: 36629447 Free PMC article.
HIV- 1 lentivirus tethering to the genome is associated with transcription factor binding sites found in genes that favour virus survival.
Suleman S, Payne A, Bowden J, Haque SA, Zahn M, Fawaz S, Khalifa MS, Jobling S, Hay D, Franco M, Fronza R, Wang W, Strobel-Freidekind O, Deichmann A, Takeuchi Y, Waddington SN, Gil-Farina I, Schmidt M, Themis M. Suleman S, et al. Among authors: khalifa ms. Gene Ther. 2022 Dec;29(12):720-729. doi: 10.1038/s41434-022-00335-4. Epub 2022 May 5. Gene Ther. 2022. PMID: 35513551 Free PMC article.
Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.
Bassano I, Ramachandran VK, Khalifa MS, Lilley CJ, Brown MR, van Aerle R, Denise H, Rowe W, George A, Cairns E, Wierzbicki C, Pickwell ND, Carlile M, Holmes N, Payne A, Loose M, Burke TA, Paterson S, Wade MJ, Grimsley JMS. Bassano I, et al. Among authors: khalifa ms. Microb Genom. 2023 Apr;9(4):mgen000933. doi: 10.1099/mgen.0.000933. Microb Genom. 2023. PMID: 37074153 Free PMC article.