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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2006 1
2008 2
2009 4
2010 4
2011 6
2012 4
2013 4
2014 4
2015 5
2016 5
2017 5
2018 10
2019 6
2020 8
2021 16
2022 9
2023 11
2024 3

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96 results

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Page 1
Bioinformatics approaches for unveiling virus-host interactions.
Iuchi H, Kawasaki J, Kubo K, Fukunaga T, Hokao K, Yokoyama G, Ichinose A, Suga K, Hamada M. Iuchi H, et al. Among authors: hamada m. Comput Struct Biotechnol J. 2023;21:1774-1784. doi: 10.1016/j.csbj.2023.02.044. Epub 2023 Feb 27. Comput Struct Biotechnol J. 2023. PMID: 36874163 Free PMC article. Review.
Web Services for RNA-RNA Interaction Prediction.
Fukunaga T, Iwakiri J, Hamada M. Fukunaga T, et al. Among authors: hamada m. Methods Mol Biol. 2023;2586:175-195. doi: 10.1007/978-1-0716-2768-6_11. Methods Mol Biol. 2023. PMID: 36705905 Review.
Mobile element variation contributes to population-specific genome diversification, gene regulation and disease risk.
Kojima S, Koyama S, Ka M, Saito Y, Parrish EH, Endo M, Takata S, Mizukoshi M, Hikino K, Takeda A, Gelinas AF, Heaton SM, Koide R, Kamada AJ, Noguchi M, Hamada M; Biobank Japan Project Consortium; Kamatani Y, Murakawa Y, Ishigaki K, Nakamura Y, Ito K, Terao C, Momozawa Y, Parrish NF. Kojima S, et al. Among authors: hamada m. Nat Genet. 2023 Jun;55(6):939-951. doi: 10.1038/s41588-023-01390-2. Epub 2023 May 11. Nat Genet. 2023. PMID: 37169872
Bioinformatics tools for lncRNA research.
Iwakiri J, Hamada M, Asai K. Iwakiri J, et al. Among authors: hamada m. Biochim Biophys Acta. 2016 Jan;1859(1):23-30. doi: 10.1016/j.bbagrm.2015.07.014. Epub 2015 Aug 10. Biochim Biophys Acta. 2016. PMID: 26271403 Review.
Generative aptamer discovery using RaptGen.
Iwano N, Adachi T, Aoki K, Nakamura Y, Hamada M. Iwano N, et al. Among authors: hamada m. Nat Comput Sci. 2022 Jun;2(6):378-386. doi: 10.1038/s43588-022-00249-6. Epub 2022 Jun 2. Nat Comput Sci. 2022. PMID: 38177576 Free PMC article.
Representation learning applications in biological sequence analysis.
Iuchi H, Matsutani T, Yamada K, Iwano N, Sumi S, Hosoda S, Zhao S, Fukunaga T, Hamada M. Iuchi H, et al. Among authors: hamada m. Comput Struct Biotechnol J. 2021 May 23;19:3198-3208. doi: 10.1016/j.csbj.2021.05.039. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34141139 Free PMC article. Review.
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, Frith MC; FANTOM consortium; Chatelain C, Carninci P, de Hoon MJL, Wasserman WW, Bréhélin L, Lecellier CH. Grapotte M, et al. Nat Commun. 2021 Jun 2;12(1):3297. doi: 10.1038/s41467-021-23143-7. Nat Commun. 2021. PMID: 34078885 Free PMC article.
In silico approaches to RNA aptamer design.
Hamada M. Hamada M. Biochimie. 2018 Feb;145:8-14. doi: 10.1016/j.biochi.2017.10.005. Epub 2017 Oct 12. Biochimie. 2018. PMID: 29032056 Review.
96 results