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Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
Portik DM, Brown CT, Pierce-Ward NT. Portik DM, et al. BMC Bioinformatics. 2022 Dec 13;23(1):541. doi: 10.1186/s12859-022-05103-0. BMC Bioinformatics. 2022. PMID: 36513983 Free PMC article.
Several short-read classification and profiling methods produced many false positives (particularly at lower abundances), required heavy filtering to achieve acceptable precision (at the cost of reduced recall), and produced inaccurate abundance estimates. By contrast, two long-r …
Several short-read classification and profiling methods produced many false positives (particularly at lower abundances), required heavy fil …
Outcomes of the "BRCA Quality Improvement Dissemination Program": An initiative to improve patient receipt of cancer genetics services at five health systems.
Bednar EM, Chen M, Walsh MT Jr, Eppolito AL, Klein MH, Teed K, Hodge B, Hunter J, Chao HG, Davis D, Serchion W, Yobbi C, Krukenberg R, Jenkinson SB, Moore JJ, Garcia C, Gonzalez F, Murray T, Nielsen LD, Ho B, Haas M, Greenzweig SB, Anderson A, Johnson C, Morman NA, Bowdish E, Wise E, Cooper JN, Russ PK, Tondo-Steele K, de Gracia BF, Levin B, Mattie K, Zarnawski K, Kalasinski M, Stone J, O'Brien C, Bream A, Kennedy AM, Paul RA, Bilbao M, Romero M, Carr RL, Siettmann JM, Vercruyssen AK, Leon K, Arun BK, Grainger AV, Warshal DP, Bowman E, Goedde TA, Halaharvi D, Rath K, Grana G, Mina L, Lu KH. Bednar EM, et al. Gynecol Oncol. 2023 May;172:106-114. doi: 10.1016/j.ygyno.2023.03.016. Epub 2023 Mar 31. Gynecol Oncol. 2023. PMID: 37004303 Free PMC article.