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2020 5
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Page 1
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
Olson RD, Assaf R, Brettin T, Conrad N, Cucinell C, Davis JJ, Dempsey DM, Dickerman A, Dietrich EM, Kenyon RW, Kuscuoglu M, Lefkowitz EJ, Lu J, Machi D, Macken C, Mao C, Niewiadomska A, Nguyen M, Olsen GJ, Overbeek JC, Parrello B, Parrello V, Porter JS, Pusch GD, Shukla M, Singh I, Stewart L, Tan G, Thomas C, VanOeffelen M, Vonstein V, Wallace ZS, Warren AS, Wattam AR, Xia F, Yoo H, Zhang Y, Zmasek CM, Scheuermann RH, Stevens RL. Olson RD, et al. Among authors: nguyen m. Nucleic Acids Res. 2023 Jan 6;51(D1):D678-D689. doi: 10.1093/nar/gkac1003. Nucleic Acids Res. 2023. PMID: 36350631 Free PMC article.
Predicting antimicrobial resistance using conserved genes.
Nguyen M, Olson R, Shukla M, VanOeffelen M, Davis JJ. Nguyen M, et al. PLoS Comput Biol. 2020 Oct 19;16(10):e1008319. doi: 10.1371/journal.pcbi.1008319. eCollection 2020 Oct. PLoS Comput Biol. 2020. PMID: 33075053 Free PMC article.
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest.
Aytan-Aktug D, Clausen PTLC, Szarvas J, Munk P, Otani S, Nguyen M, Davis JJ, Lund O, Aarestrup FM. Aytan-Aktug D, et al. Among authors: nguyen m. mSystems. 2022 Apr 26;7(2):e0118021. doi: 10.1128/msystems.01180-21. Epub 2022 Apr 6. mSystems. 2022. PMID: 35382558 Free PMC article.
Delta Variants of SARS-CoV-2 Cause Significantly Increased Vaccine Breakthrough COVID-19 Cases in Houston, Texas.
Christensen PA, Olsen RJ, Long SW, Subedi S, Davis JJ, Hodjat P, Walley DR, Kinskey JC, Ojeda Saavedra M, Pruitt L, Reppond K, Shyer MN, Cambric J, Gadd R, Thakur RM, Batajoo A, Mangham R, Pena S, Trinh T, Yerramilli P, Nguyen M, Olson R, Snehal R, Gollihar J, Musser JM. Christensen PA, et al. Among authors: nguyen m. Am J Pathol. 2022 Feb;192(2):320-331. doi: 10.1016/j.ajpath.2021.10.019. Epub 2021 Nov 11. Am J Pathol. 2022. PMID: 34774517 Free PMC article.
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.
Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R, Butler RM, Chlenski P, Conrad N, Dickerman A, Dietrich EM, Gabbard JL, Gerdes S, Guard A, Kenyon RW, Machi D, Mao C, Murphy-Olson D, Nguyen M, Nordberg EK, Olsen GJ, Olson RD, Overbeek JC, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomas C, VanOeffelen M, Vonstein V, Warren AS, Xia F, Xie D, Yoo H, Stevens R. Davis JJ, et al. Among authors: nguyen m. Nucleic Acids Res. 2020 Jan 8;48(D1):D606-D612. doi: 10.1093/nar/gkz943. Nucleic Acids Res. 2020. PMID: 31667520 Free PMC article.
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.
VanOeffelen M, Nguyen M, Aytan-Aktug D, Brettin T, Dietrich EM, Kenyon RW, Machi D, Mao C, Olson R, Pusch GD, Shukla M, Stevens R, Vonstein V, Warren AS, Wattam AR, Yoo H, Davis JJ. VanOeffelen M, et al. Among authors: nguyen m. Brief Bioinform. 2021 Nov 5;22(6):bbab313. doi: 10.1093/bib/bbab313. Brief Bioinform. 2021. PMID: 34379107 Free PMC article.
17 results