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Comparison of high-throughput sequencing data compression tools.
Numanagić I, Bonfield JK, Hach F, Voges J, Ostermann J, Alberti C, Mattavelli M, Sahinalp SC. Numanagić I, et al. Among authors: mattavelli m. Nat Methods. 2016 Dec;13(12):1005-1008. doi: 10.1038/nmeth.4037. Epub 2016 Oct 24. Nat Methods. 2016. PMID: 27776113
Toward a common standard for data and specimen provenance in life sciences.
Wittner R, Holub P, Mascia C, Frexia F, Müller H, Plass M, Allocca C, Betsou F, Burdett T, Cancio I, Chapman A, Chapman M, Courtot M, Curcin V, Eder J, Elliot M, Exter K, Goble C, Golebiewski M, Kisler B, Kremer A, Leo S, Lin-Gibson S, Marsano A, Mattavelli M, Moore J, Nakae H, Perseil I, Salman A, Sluka J, Soiland-Reyes S, Strambio-De-Castillia C, Sussman M, Swedlow JR, Zatloukal K, Geiger J. Wittner R, et al. Among authors: mattavelli m. Learn Health Syst. 2023 Apr 18;8(1):e10365. doi: 10.1002/lrh2.10365. eCollection 2024 Jan. Learn Health Syst. 2023. PMID: 38249839 Free PMC article.
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.
Alberti C, Daniels N, Hernaez M, Voges J, Goldfeder RL, Hernandez-Lopez AA, Mattavelli M, Berger B. Alberti C, et al. Among authors: mattavelli m. Proc Data Compress Conf. 2016 Mar-Apr;2016:221-230. doi: 10.1109/DCC.2016.39. Epub 2016 Dec 19. Proc Data Compress Conf. 2016. PMID: 28845445 Free PMC article.