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Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs.
Cell. 2021 Jul 22;184(15):3962-3980.e17. doi: 10.1016/j.cell.2021.05.046. Epub 2021 Jun 3.
Cell. 2021.
PMID: 34171305
Free PMC article.
The HLA-II immunopeptidome of SARS-CoV-2.
Weingarten-Gabbay S, Chen DY, Sarkizova S, Taylor HB, Gentili M, Pearlman LR, Bauer MR, Rice CM, Clauser KR, Hacohen N, Carr SA, Abelin JG, Saeed M, Sabeti PC.
Weingarten-Gabbay S, et al. Among authors: pearlman lr.
bioRxiv [Preprint]. 2023 Jun 1:2023.05.26.542482. doi: 10.1101/2023.05.26.542482.
bioRxiv. 2023.
PMID: 37398281
Free PMC article.
Updated.
Preprint.
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The HLA-II immunopeptidome of SARS-CoV-2.
Weingarten-Gabbay S, Chen DY, Sarkizova S, Taylor HB, Gentili M, Hernandez GM, Pearlman LR, Bauer MR, Rice CM, Clauser KR, Hacohen N, Carr SA, Abelin JG, Saeed M, Sabeti PC.
Weingarten-Gabbay S, et al. Among authors: pearlman lr.
Cell Rep. 2024 Jan 23;43(1):113596. doi: 10.1016/j.celrep.2023.113596. Epub 2023 Dec 20.
Cell Rep. 2024.
PMID: 38117652
Free PMC article.
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HLA-I immunopeptidome profiling of human cells infected with high-containment enveloped viruses.
Weingarten-Gabbay S, Pearlman LR, Chen DY, Klaeger S, Taylor HB, Welch NL, Keskin DB, Carr SA, Abelin JG, Saeed M, Sabeti PC.
Weingarten-Gabbay S, et al. Among authors: pearlman lr.
STAR Protoc. 2022 Dec 16;3(4):101910. doi: 10.1016/j.xpro.2022.101910. Epub 2022 Dec 8.
STAR Protoc. 2022.
PMID: 36595954
Free PMC article.
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Stimulation of Replication Template-Switching by DNA-Protein Crosslinks.
Laranjo LT, Klaric JA, Pearlman LR, Lovett ST.
Laranjo LT, et al. Among authors: pearlman lr.
Genes (Basel). 2018 Dec 27;10(1):14. doi: 10.3390/genes10010014.
Genes (Basel). 2018.
PMID: 30591691
Free PMC article.
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Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows.
Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw BM, Pearlman LR, Berenzy D, Dewey HB, Kales S, Dobbins ST, Shenoy ES, Hooper D, Pierce VM, Zachary KC, Park DJ, MacInnis BL, Tewhey R, Lemieux JE, Sabeti PC, Reilly SK, Siddle KJ.
Lagerborg KA, et al. Among authors: pearlman lr.
Nat Microbiol. 2022 Jan;7(1):108-119. doi: 10.1038/s41564-021-01019-2. Epub 2021 Dec 14.
Nat Microbiol. 2022.
PMID: 34907347
Free PMC article.
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SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs.
Weingarten-Gabbay S, Klaeger S, Sarkizova S, Pearlman LR, Chen DY, Bauer MR, Taylor HB, Conway HL, Tomkins-Tinch CH, Finkel Y, Nachshon A, Gentili M, Rivera KD, Keskin DB, Rice CM, Clauser KR, Hacohen N, Carr SA, Abelin JG, Saeed M, Sabeti PC.
Weingarten-Gabbay S, et al. Among authors: pearlman lr.
bioRxiv [Preprint]. 2020 Oct 26:2020.10.02.324145. doi: 10.1101/2020.10.02.324145.
bioRxiv. 2020.
PMID: 33024965
Free PMC article.
Preprint.
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