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Page 1
Efficient Acceleration of the Pair-HMMs Forward Algorithm for GATK HaplotypeCaller on Graphics Processing Units.
Evol Bioinform Online. 2018 Mar 12;14:1176934318760543. doi: 10.1177/1176934318760543. eCollection 2018.
Evol Bioinform Online. 2018.
PMID: 29568218
Free PMC article.
Review.
QuASeR: Quantum Accelerated de novo DNA sequence reconstruction.
Sarkar A, Al-Ars Z, Bertels K.
Sarkar A, et al. Among authors: bertels k.
PLoS One. 2021 Apr 12;16(4):e0249850. doi: 10.1371/journal.pone.0249850. eCollection 2021.
PLoS One. 2021.
PMID: 33844699
Free PMC article.
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GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data.
Ahmed N, Lévy J, Ren S, Mushtaq H, Bertels K, Al-Ars Z.
Ahmed N, et al. Among authors: bertels k.
BMC Bioinformatics. 2019 Oct 25;20(1):520. doi: 10.1186/s12859-019-3086-9.
BMC Bioinformatics. 2019.
PMID: 31653208
Free PMC article.
Item in Clipboard
Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths.
Houtgast EJ, Sima VM, Bertels K, Al-Ars Z.
Houtgast EJ, et al. Among authors: bertels k.
Comput Biol Chem. 2018 Aug;75:54-64. doi: 10.1016/j.compbiolchem.2018.03.024. Epub 2018 Apr 12.
Comput Biol Chem. 2018.
PMID: 29747076
Item in Clipboard
GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads.
Ahmed N, Qiu TD, Bertels K, Al-Ars Z.
Ahmed N, et al. Among authors: bertels k.
BMC Bioinformatics. 2020 Sep 17;21(Suppl 13):388. doi: 10.1186/s12859-020-03685-1.
BMC Bioinformatics. 2020.
PMID: 32938392
Free PMC article.
Item in Clipboard
GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller.
Ren S, Ahmed N, Bertels K, Al-Ars Z.
Ren S, et al. Among authors: bertels k.
BMC Genomics. 2019 Apr 4;20(Suppl 2):184. doi: 10.1186/s12864-019-5468-9.
BMC Genomics. 2019.
PMID: 30967111
Free PMC article.
Item in Clipboard
Correction to: GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data.
Ahmed N, Lévy J, Ren S, Mushtaq H, Bertels K, Al-Ars Z.
Ahmed N, et al. Among authors: bertels k.
BMC Bioinformatics. 2019 Nov 19;20(1):597. doi: 10.1186/s12859-019-3185-7.
BMC Bioinformatics. 2019.
PMID: 31744474
Free PMC article.
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