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PAV ontology: provenance, authoring and versioning.
Ciccarese P, Soiland-Reyes S, Belhajjame K, Gray AJ, Goble C, Clark T. Ciccarese P, et al. Among authors: belhajjame k. J Biomed Semantics. 2013 Nov 22;4(1):37. doi: 10.1186/2041-1480-4-37. J Biomed Semantics. 2013. PMID: 24267948 Free PMC article.
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C. Wolstencroft K, et al. Among authors: belhajjame k. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2. Nucleic Acids Res. 2013. PMID: 23640334 Free PMC article.
Modeling and managing experimental data using FuGE.
Jones AR, Lister AL, Hermida L, Wilkinson P, Eisenacher M, Belhajjame K, Gibson F, Lord P, Pocock M, Rosenfelder H, Santoyo-Lopez J, Wipat A, Paton NW. Jones AR, et al. Among authors: belhajjame k. OMICS. 2009 Jun;13(3):239-51. doi: 10.1089/omi.2008.0080. OMICS. 2009. PMID: 19441879
ISPIDER Central: an integrated database web-server for proteomics.
Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ. Siepen JA, et al. Among authors: belhajjame k. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W485-90. doi: 10.1093/nar/gkn196. Epub 2008 Apr 25. Nucleic Acids Res. 2008. PMID: 18440977 Free PMC article.
Structuring research methods and data with the research object model: genomics workflows as a case study.
Hettne KM, Dharuri H, Zhao J, Wolstencroft K, Belhajjame K, Soiland-Reyes S, Mina E, Thompson M, Cruickshank D, Verdes-Montenegro L, Garrido J, de Roure D, Corcho O, Klyne G, van Schouwen R, 't Hoen PA, Bechhofer S, Goble C, Roos M. Hettne KM, et al. Among authors: belhajjame k. J Biomed Semantics. 2014 Sep 18;5(1):41. doi: 10.1186/2041-1480-5-41. eCollection 2014. J Biomed Semantics. 2014. PMID: 25276335 Free PMC article.
A toolkit for capturing and sharing FuGE experiments.
Belhajjame K, Jones AR, Paton NW. Belhajjame K, et al. Bioinformatics. 2008 Nov 15;24(22):2647-9. doi: 10.1093/bioinformatics/btn496. Epub 2008 Sep 17. Bioinformatics. 2008. PMID: 18801749