Jose M. Muino - Search Results

Year	Number of Results
2006	1
2007	1
2009	1
2010	2
2011	3
2012	2
2013	2
2014	5
2015	3
2016	1
2017	3
2018	6
2019	2
2020	1
2021	3
2022	1
2023	4
2024	2

1

Cell identity specification in plants: lessons from flower development.

Xu X, Smaczniak C, Muino JM, Kaufmann K. Xu X, et al. Among authors: muino jm. J Exp Bot. 2021 May 28;72(12):4202-4217. doi: 10.1093/jxb/erab110. J Exp Bot. 2021. PMID: 33865238 Free PMC article. Review.

2

Estimating DNA-Binding Specificities of Transcription Factors Using SELEX-Seq.

Chen P, Smaczniak C, Haffner J, Muino JM, Kaufmann K. Chen P, et al. Among authors: muino jm. Methods Mol Biol. 2023;2698:147-161. doi: 10.1007/978-1-0716-3354-0_10. Methods Mol Biol. 2023. PMID: 37682474

3

Dual specificity and target gene selection by the MADS-domain protein FRUITFULL.

van Mourik H, Chen P, Smaczniak C, Boeren S, Kaufmann K, Bemer M, Angenent GC, Muino JM. van Mourik H, et al. Among authors: muino jm. Nat Plants. 2023 Mar;9(3):473-485. doi: 10.1038/s41477-023-01351-x. Epub 2023 Feb 16. Nat Plants. 2023. PMID: 36797351

4

Single-nucleus RNA sequencing of plant tissues using a nanowell-based system.

Sunaga-Franze DY, Muino JM, Braeuning C, Xu X, Zong M, Smaczniak C, Yan W, Fischer C, Vidal R, Kliem M, Kaufmann K, Sauer S. Sunaga-Franze DY, et al. Among authors: muino jm. Plant J. 2021 Nov;108(3):859-869. doi: 10.1111/tpj.15458. Epub 2021 Sep 15. Plant J. 2021. PMID: 34390289 Free article.

5

Orchestration of floral initiation by APETALA1.

Kaufmann K, Wellmer F, Muiño JM, Ferrier T, Wuest SE, Kumar V, Serrano-Mislata A, Madueño F, Krajewski P, Meyerowitz EM, Angenent GC, Riechmann JL. Kaufmann K, et al. Among authors: muino jm. Science. 2010 Apr 2;328(5974):85-9. doi: 10.1126/science.1185244. Science. 2010. PMID: 20360106

6

Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.

Muiño JM, Angenent GC, Kaufmann K. Muiño JM, et al. Methods Mol Biol. 2011;754:293-305. doi: 10.1007/978-1-61779-154-3_17. Methods Mol Biol. 2011. PMID: 21720960 Review.

7

A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data.

Neumann M, Xu X, Smaczniak C, Schumacher J, Yan W, Blüthgen N, Greb T, Jönsson H, Traas J, Kaufmann K, Muino JM. Neumann M, et al. Among authors: muino jm. Nat Commun. 2022 May 20;13(1):2838. doi: 10.1038/s41467-022-30177-y. Nat Commun. 2022. PMID: 35595749 Free PMC article.

8

Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.

Pajoro A, Muiño JM, Angenent GC, Kaufmann K. Pajoro A, et al. Among authors: muino jm. Methods Mol Biol. 2018;1675:167-181. doi: 10.1007/978-1-4939-7318-7_11. Methods Mol Biol. 2018. PMID: 29052192

9

A Hands-On Guide to Generate Spatial Gene Expression Profiles by Integrating scRNA-seq and 3D-Reconstructed Microscope-Based Plant Structures.

Neumann M, Muino JM. Neumann M, et al. Among authors: muino jm. Methods Mol Biol. 2023;2686:567-580. doi: 10.1007/978-1-0716-3299-4_27. Methods Mol Biol. 2023. PMID: 37540378

10

Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks.

Mallm JP, Iskar M, Ishaque N, Klett LC, Kugler SJ, Muino JM, Teif VB, Poos AM, Großmann S, Erdel F, Tavernari D, Koser SD, Schumacher S, Brors B, König R, Remondini D, Vingron M, Stilgenbauer S, Lichter P, Zapatka M, Mertens D, Rippe K. Mallm JP, et al. Among authors: muino jm. Mol Syst Biol. 2019 May 22;15(5):e8339. doi: 10.15252/msb.20188339. Mol Syst Biol. 2019. PMID: 31118277 Free PMC article.

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