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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2014 1
2015 2
2016 2
2017 2
2018 3
2019 3
2020 3
2021 3
2022 3
2023 5
2024 1

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26 results

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Page 1
A Deep Learning Approach to Antibiotic Discovery.
Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ. Stokes JM, et al. Cell. 2020 Feb 20;180(4):688-702.e13. doi: 10.1016/j.cell.2020.01.021. Cell. 2020. PMID: 32084340 Free PMC article.
Bacterial Metabolism and Antibiotic Efficacy.
Stokes JM, Lopatkin AJ, Lobritz MA, Collins JJ. Stokes JM, et al. Cell Metab. 2019 Aug 6;30(2):251-259. doi: 10.1016/j.cmet.2019.06.009. Epub 2019 Jul 3. Cell Metab. 2019. PMID: 31279676 Free PMC article. Review.
Deep learning-guided discovery of an antibiotic targeting Acinetobacter baumannii.
Liu G, Catacutan DB, Rathod K, Swanson K, Jin W, Mohammed JC, Chiappino-Pepe A, Syed SA, Fragis M, Rachwalski K, Magolan J, Surette MG, Coombes BK, Jaakkola T, Barzilay R, Collins JJ, Stokes JM. Liu G, et al. Among authors: stokes jm. Nat Chem Biol. 2023 Nov;19(11):1342-1350. doi: 10.1038/s41589-023-01349-8. Epub 2023 May 25. Nat Chem Biol. 2023. PMID: 37231267
Discovery of a structural class of antibiotics with explainable deep learning.
Wong F, Zheng EJ, Valeri JA, Donghia NM, Anahtar MN, Omori S, Li A, Cubillos-Ruiz A, Krishnan A, Jin W, Manson AL, Friedrichs J, Helbig R, Hajian B, Fiejtek DK, Wagner FF, Soutter HH, Earl AM, Stokes JM, Renner LD, Collins JJ. Wong F, et al. Among authors: stokes jm. Nature. 2024 Feb;626(7997):177-185. doi: 10.1038/s41586-023-06887-8. Epub 2023 Dec 20. Nature. 2024. PMID: 38123686
Our Evolving Understanding of the Mechanism of Quinolones.
Gutierrez A, Stokes JM, Matic I. Gutierrez A, et al. Among authors: stokes jm. Antibiotics (Basel). 2018 Apr 8;7(2):32. doi: 10.3390/antibiotics7020032. Antibiotics (Basel). 2018. PMID: 29642475 Free PMC article. Review.
Antibiotic discovery in the artificial intelligence era.
Lluka T, Stokes JM. Lluka T, et al. Among authors: stokes jm. Ann N Y Acad Sci. 2023 Jan;1519(1):74-93. doi: 10.1111/nyas.14930. Epub 2022 Nov 29. Ann N Y Acad Sci. 2023. PMID: 36447334 Review.
A Deep Learning Approach to Antibiotic Discovery.
Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ. Stokes JM, et al. Cell. 2020 Apr 16;181(2):475-483. doi: 10.1016/j.cell.2020.04.001. Cell. 2020. PMID: 32302574 Free article. No abstract available.
Discovery of antibiotics that selectively kill metabolically dormant bacteria.
Zheng EJ, Valeri JA, Andrews IW, Krishnan A, Bandyopadhyay P, Anahtar MN, Herneisen A, Schulte F, Linnehan B, Wong F, Stokes JM, Renner LD, Lourido S, Collins JJ. Zheng EJ, et al. Among authors: stokes jm. Cell Chem Biol. 2023 Nov 15:S2451-9456(23)00387-2. doi: 10.1016/j.chembiol.2023.10.026. Online ahead of print. Cell Chem Biol. 2023. PMID: 38029756
26 results