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Page 1
Metabolic models of human gut microbiota: Advances and challenges.
Rios Garza D, Gonze D, Zafeiropoulos H, Liu B, Faust K. Rios Garza D, et al. Among authors: zafeiropoulos h. Cell Syst. 2023 Feb 15;14(2):109-121. doi: 10.1016/j.cels.2022.11.002. Cell Syst. 2023. PMID: 36796330 Free article. Review.
dingo: a Python package for metabolic flux sampling.
Chalkis A, Fisikopoulos V, Tsigaridas E, Zafeiropoulos H. Chalkis A, et al. Among authors: zafeiropoulos h. Bioinform Adv. 2024 Mar 22;4(1):vbae037. doi: 10.1093/bioadv/vbae037. eCollection 2024. Bioinform Adv. 2024. PMID: 38586119 Free PMC article.
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
Hakimzadeh A, Abdala Asbun A, Albanese D, Bernard M, Buchner D, Callahan B, Caporaso JG, Curd E, Djemiel C, Brandström Durling M, Elbrecht V, Gold Z, Gweon HS, Hajibabaei M, Hildebrand F, Mikryukov V, Normandeau E, Özkurt E, M Palmer J, Pascal G, Porter TM, Straub D, Vasar M, Větrovský T, Zafeiropoulos H, Anslan S. Hakimzadeh A, et al. Among authors: zafeiropoulos h. Mol Ecol Resour. 2023 Aug 7:10.1111/1755-0998.13847. doi: 10.1111/1755-0998.13847. Online ahead of print. Mol Ecol Resour. 2023. PMID: 37548515
0s and 1s in marine molecular research: a regional HPC perspective.
Zafeiropoulos H, Gioti A, Ninidakis S, Potirakis A, Paragkamian S, Angelova N, Antoniou A, Danis T, Kaitetzidou E, Kasapidis P, Kristoffersen JB, Papadogiannis V, Pavloudi C, Ha QV, Lagnel J, Pattakos N, Perantinos G, Sidirokastritis D, Vavilis P, Kotoulas G, Manousaki T, Sarropoulou E, Tsigenopoulos CS, Arvanitidis C, Magoulas A, Pafilis E. Zafeiropoulos H, et al. Gigascience. 2021 Aug 18;10(8):giab053. doi: 10.1093/gigascience/giab053. Gigascience. 2021. PMID: 34405237 Free PMC article.