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PFP-FM: An Accelerated FM-index.
Hong A, Oliva M, Köppl D, Bannai H, Boucher C, Gagie T. Hong A, et al. Among authors: koppl d. Res Sq [Preprint]. 2023 Oct 30:rs.3.rs-3487536. doi: 10.21203/rs.3.rs-3487536/v1. Res Sq. 2023. PMID: 37961504 Free PMC article. Preprint.
Pfp-fm: an accelerated FM-index.
Hong A, Oliva M, Köppl D, Bannai H, Boucher C, Gagie T. Hong A, et al. Among authors: koppl d. Algorithms Mol Biol. 2024 Apr 10;19(1):15. doi: 10.1186/s13015-024-00260-8. Algorithms Mol Biol. 2024. PMID: 38600518 Free PMC article.
PHONI: Streamed Matching Statistics with Multi-Genome References.
Boucher C, Gagie T, Tomohiro I, Köppl D, Langmead B, Manzini G, Navarro G, Pacheco A, Rossi M. Boucher C, et al. Among authors: koppl d. Proc Data Compress Conf. 2021 Mar;2021:193-202. doi: 10.1109/dcc50243.2021.00027. Epub 2021 May 10. Proc Data Compress Conf. 2021. PMID: 34778549 Free PMC article.