Dmitry Shtokalo - Search Results

Year	Number of Results
2012	2
2013	3
2016	1
2017	2
2020	3
2021	2
2023	1
2024	1

1

RNAseq profiling of blood from patients with coronary artery disease: Signature of a T cell imbalance.

McCaffrey TA, Toma I, Yang Z, Katz R, Reiner J, Mazhari R, Shah P, Falk Z, Wargowsky R, Goldman J, Jones D, Shtokalo D, Antonets D, Jepson T, Fetisova A, Jaatinen K, Ree N, Ri M. McCaffrey TA, et al. Among authors: shtokalo d. J Mol Cell Cardiol Plus. 2023 Jun;4:100033. doi: 10.1016/j.jmccpl.2023.100033. Epub 2023 Mar 25. J Mol Cell Cardiol Plus. 2023. PMID: 37303712 Free PMC article.

2

Transcriptomic analysis of HEK293A cells with a CRISPR/Cas9-mediated TDP1 knockout.

Dyrkheeva NS, Zakharenko AL, Malakhova AA, Okorokova LS, Shtokalo DN, Medvedev SP, Tupikin AA, Kabilov MR, Lavrik OI. Dyrkheeva NS, et al. Among authors: shtokalo dn. Biochim Biophys Acta Gen Subj. 2024 Apr 14;1868(7):130616. doi: 10.1016/j.bbagen.2024.130616. Online ahead of print. Biochim Biophys Acta Gen Subj. 2024. PMID: 38621596

3

Genome-wide association and whole exome sequencing studies reveal a novel candidate locus for restless legs syndrome.

Ergun U, Say B, Ergun SG, Percin FE, Inan L, Kaygisiz S, Asal PG, Yurteri B, Struchalin M, Shtokalo D, Ergun MA. Ergun U, et al. Among authors: shtokalo d. Eur J Med Genet. 2021 Apr;64(4):104186. doi: 10.1016/j.ejmg.2021.104186. Epub 2021 Mar 2. Eur J Med Genet. 2021. PMID: 33662638

4

Genome-wide profiling and differential expression of microRNA in rat pluripotent stem cells.

Sherstyuk VV, Medvedev SP, Elisaphenko EA, Vaskova EA, Ri MT, Vyatkin YV, Saik OV, Shtokalo DN, Pokushalov EA, Zakian SM. Sherstyuk VV, et al. Among authors: shtokalo dn. Sci Rep. 2017 Jun 5;7(1):2787. doi: 10.1038/s41598-017-02632-0. Sci Rep. 2017. PMID: 28584262 Free PMC article.

5

On the importance of small changes in RNA expression.

St Laurent G, Shtokalo D, Tackett MR, Yang Z, Vyatkin Y, Milos PM, Seilheimer B, McCaffrey TA, Kapranov P. St Laurent G, et al. Among authors: shtokalo d. Methods. 2013 Sep 1;63(1):18-24. doi: 10.1016/j.ymeth.2013.03.027. Epub 2013 Apr 4. Methods. 2013. PMID: 23563143

6

RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model.

St Laurent G 3rd, Toma I, Seilheimer B, Cesnulevicius K, Schultz M, Tackett M, Zhou J, Ri M, Shtokalo D, Antonets D, Jepson T, McCaffrey TA. St Laurent G 3rd, et al. Among authors: shtokalo d. BMC Genomics. 2021 Nov 25;22(1):854. doi: 10.1186/s12864-021-08083-2. BMC Genomics. 2021. PMID: 34823472 Free PMC article.

7

Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis.

Russkikh N, Antonets D, Shtokalo D, Makarov A, Vyatkin Y, Zakharov A, Terentyev E. Russkikh N, et al. Among authors: shtokalo d. Bioinformatics. 2020 Dec 22;36(20):5076-5085. doi: 10.1093/bioinformatics/btaa624. Bioinformatics. 2020. PMID: 33026062 Free PMC article.

8

Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts.

McCaffrey TA, St Laurent G 3rd, Shtokalo D, Antonets D, Vyatkin Y, Jones D, Battison E, Nigg JT. McCaffrey TA, et al. Among authors: shtokalo d. BMC Med Genomics. 2020 Oct 28;13(1):160. doi: 10.1186/s12920-020-00808-8. BMC Med Genomics. 2020. PMID: 33115496 Free PMC article.

9

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.

St Laurent G, Tackett MR, Nechkin S, Shtokalo D, Antonets D, Savva YA, Maloney R, Kapranov P, Lawrence CE, Reenan RA. St Laurent G, et al. Among authors: shtokalo d. Nat Struct Mol Biol. 2013 Nov;20(11):1333-9. doi: 10.1038/nsmb.2675. Epub 2013 Sep 29. Nat Struct Mol Biol. 2013. PMID: 24077224

10

CellCountCV-A Web-Application for Accurate Cell Counting and Automated Batch Processing of Microscopic Images Using Fully Convolutional Neural Networks.

Antonets D, Russkikh N, Sanchez A, Kovalenko V, Bairamova E, Shtokalo D, Medvedev S, Zakian S. Antonets D, et al. Among authors: shtokalo d. Sensors (Basel). 2020 Jun 29;20(13):3653. doi: 10.3390/s20133653. Sensors (Basel). 2020. PMID: 32610652 Free PMC article.

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