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The mRubyFT Protein, Genetically Encoded Blue-to-Red Fluorescent Timer.
Subach OM, Tashkeev A, Vlaskina AV, Petrenko DE, Gaivoronskii FA, Nikolaeva AY, Ivashkina OI, Anokhin KV, Popov VO, Boyko KM, Subach FV. Subach OM, et al. Among authors: petrenko de. Int J Mol Sci. 2022 Mar 16;23(6):3208. doi: 10.3390/ijms23063208. Int J Mol Sci. 2022. PMID: 35328628 Free PMC article.
Crystal Structure of Inhibitor-Bound Bacterial Oligopeptidase B in the Closed State: Similarity and Difference between Protozoan and Bacterial Enzymes.
Petrenko DE, Karlinsky DM, Gordeeva VD, Arapidi GP, Britikova EV, Britikov VV, Nikolaeva AY, Boyko KM, Timofeev VI, Kuranova IP, Mikhailova AG, Bocharov EV, Rakitina TV. Petrenko DE, et al. Int J Mol Sci. 2023 Jan 24;24(3):2286. doi: 10.3390/ijms24032286. Int J Mol Sci. 2023. PMID: 36768612 Free PMC article.
Molecular dynamics complemented by site-directed mutagenesis reveals significant difference between the interdomain salt bridge networks stabilizing oligopeptidases B from bacteria and protozoa in their active conformations.
Petrenko DE, Mikhailova AG, Timofeev VI, Agapova YК, Karlinsky DM, Komolov AS, Korzhenevskiy DA, Vlaskina AV, Rumsh LD, Rakitina TV. Petrenko DE, et al. J Biomol Struct Dyn. 2020 Oct;38(16):4868-4882. doi: 10.1080/07391102.2019.1692694. Epub 2019 Nov 25. J Biomol Struct Dyn. 2020. PMID: 31724904