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MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.
Shugay M, Zaretsky AR, Shagin DA, Shagina IA, Volchenkov IA, Shelenkov AA, Lebedin MY, Bagaev DV, Lukyanov S, Chudakov DM. Shugay M, et al. Among authors: shagin da. PLoS Comput Biol. 2017 May 5;13(5):e1005480. doi: 10.1371/journal.pcbi.1005480. eCollection 2017 May. PLoS Comput Biol. 2017. PMID: 28475621 Free PMC article.
Towards error-free profiling of immune repertoires.
Shugay M, Britanova OV, Merzlyak EM, Turchaninova MA, Mamedov IZ, Tuganbaev TR, Bolotin DA, Staroverov DB, Putintseva EV, Plevova K, Linnemann C, Shagin D, Pospisilova S, Lukyanov S, Schumacher TN, Chudakov DM. Shugay M, et al. Among authors: shagin d. Nat Methods. 2014 Jun;11(6):653-5. doi: 10.1038/nmeth.2960. Epub 2014 May 4. Nat Methods. 2014. PMID: 24793455
Molecular Typing, Characterization of Antimicrobial Resistance, Virulence Profiling and Analysis of Whole-Genome Sequence of Clinical Klebsiella pneumoniae Isolates.
Shelenkov A, Mikhaylova Y, Yanushevich Y, Samoilov A, Petrova L, Fomina V, Gusarov V, Zamyatin M, Shagin D, Akimkin V. Shelenkov A, et al. Among authors: shagin d. Antibiotics (Basel). 2020 May 17;9(5):261. doi: 10.3390/antibiotics9050261. Antibiotics (Basel). 2020. PMID: 32429555 Free PMC article.
Clonal diversity, antimicrobial resistance, and genome features among nonfermenting gram-negative bacteria isolated from patients with cystic fibrosis in Russia.
Bocharova Y, Chebotar I, Savinova T, Lyamin A, Kondratenko O, Polikarpova S, Fedorova N, Semykin S, Korostin D, Chaplin A, Shagin D, Mayanskiy N. Bocharova Y, et al. Among authors: shagin d. Diagn Microbiol Infect Dis. 2024 Feb;108(2):116102. doi: 10.1016/j.diagmicrobio.2023.116102. Epub 2023 Oct 10. Diagn Microbiol Infect Dis. 2024. PMID: 37984108
Antimicrobial Resistance and Genomic Characterization of OXA-48- and CTX-M-15-Co-Producing Hypervirulent Klebsiella pneumoniae ST23 Recovered from Nosocomial Outbreak.
Shaidullina E, Shelenkov A, Yanushevich Y, Mikhaylova Y, Shagin D, Alexandrova I, Ershova O, Akimkin V, Kozlov R, Edelstein M. Shaidullina E, et al. Among authors: shagin d. Antibiotics (Basel). 2020 Dec 3;9(12):862. doi: 10.3390/antibiotics9120862. Antibiotics (Basel). 2020. PMID: 33287207 Free PMC article.
13 results