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Page 1
The Future of Protein Secondary Structure Prediction Was Invented by Oleg Ptitsyn.
Biomolecules. 2020 Jun 16;10(6):910. doi: 10.3390/biom10060910.
Biomolecules. 2020.
PMID: 32560074
Free PMC article.
Review.
Entropy and Variability: A Second Opinion by Deep Learning.
Rademaker DT, Xue LC, 't Hoen PAC, Vriend G.
Rademaker DT, et al.
Biomolecules. 2022 Nov 23;12(12):1740. doi: 10.3390/biom12121740.
Biomolecules. 2022.
PMID: 36551168
Free PMC article.
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PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes.
Marzella DF, Parizi FM, van Tilborg D, Renaud N, Sybrandi D, Buzatu R, Rademaker DT, 't Hoen PAC, Xue LC.
Marzella DF, et al. Among authors: rademaker dt.
Front Immunol. 2022 May 10;13:878762. doi: 10.3389/fimmu.2022.878762. eCollection 2022.
Front Immunol. 2022.
PMID: 35619705
Free PMC article.
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Quantifying the deformability of malaria-infected red blood cells using deep learning trained on synthetic cells.
Rademaker DT, Koopmans JJ, Thyen GMSM, Piruska A, Huck WTS, Vriend G, 't Hoen PAC, Kooij TWA, Huynen MA, Proellochs NI.
Rademaker DT, et al.
iScience. 2023 Nov 23;26(12):108542. doi: 10.1016/j.isci.2023.108542. eCollection 2023 Dec 15.
iScience. 2023.
PMID: 38089575
Free PMC article.
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GradPose: a very fast and memory-efficient gradient descent-based tool for superimposing millions of protein structures from computational simulations.
Rademaker DT, van Geemen KJ, Xue LC.
Rademaker DT, et al.
Bioinformatics. 2023 Aug 1;39(8):btad444. doi: 10.1093/bioinformatics/btad444.
Bioinformatics. 2023.
PMID: 37471594
Free PMC article.
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