Brian McConeghy - Search Results

Year	Number of Results
2012	3
2014	2
2015	1
2016	2
2017	1
2019	3
2020	1
2021	4
2023	2
2024	1

1

A genome-wide CRISPR screen maps endogenous regulators of PPARG gene expression in bladder cancer.

Tortora D, Roberts ME, Kumar G, Kotapalli SS, Ritch E, Scurll JM, McConeghy B, Sinha S, Wyatt AW, Black PC, Daugaard M. Tortora D, et al. Among authors: mcconeghy b. iScience. 2023 Mar 30;26(5):106525. doi: 10.1016/j.isci.2023.106525. eCollection 2023 May 19. iScience. 2023. PMID: 37250326 Free PMC article.

2

Functional mapping of androgen receptor enhancer activity.

Huang CF, Lingadahalli S, Morova T, Ozturan D, Hu E, Yu IPL, Linder S, Hoogstraat M, Stelloo S, Sar F, van der Poel H, Altintas UB, Saffarzadeh M, Le Bihan S, McConeghy B, Gokbayrak B, Feng FY, Gleave ME, Bergman AM, Collins C, Hach F, Zwart W, Emberly E, Lack NA. Huang CF, et al. Among authors: mcconeghy b. Genome Biol. 2021 May 11;22(1):149. doi: 10.1186/s13059-021-02339-6. Genome Biol. 2021. PMID: 33975627 Free PMC article.

3

Alignment-free clustering of UMI tagged DNA molecules.

Orabi B, Erhan E, McConeghy B, Volik SV, Le Bihan S, Bell R, Collins CC, Chauve C, Hach F. Orabi B, et al. Among authors: mcconeghy b. Bioinformatics. 2019 Jun 1;35(11):1829-1836. doi: 10.1093/bioinformatics/bty888. Bioinformatics. 2019. PMID: 30351359

4

Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing.

Orabi B, Xie N, McConeghy B, Dong X, Chauve C, Hach F. Orabi B, et al. Among authors: mcconeghy b. Nucleic Acids Res. 2023 Jan 25;51(2):e11. doi: 10.1093/nar/gkac1112. Nucleic Acids Res. 2023. PMID: 36478271 Free PMC article.

5

BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma.

Shrestha R, Nabavi N, Lin YY, Mo F, Anderson S, Volik S, Adomat HH, Lin D, Xue H, Dong X, Shukin R, Bell RH, McConeghy B, Haegert A, Brahmbhatt S, Li E, Oo HZ, Hurtado-Coll A, Fazli L, Zhou J, McConnell Y, McCart A, Lowy A, Morin GB, Chen T, Daugaard M, Sahinalp SC, Hach F, Le Bihan S, Gleave ME, Wang Y, Churg A, Collins CC. Shrestha R, et al. Among authors: mcconeghy b. Genome Med. 2019 Feb 18;11(1):8. doi: 10.1186/s13073-019-0620-3. Genome Med. 2019. PMID: 30777124 Free PMC article.

6

Clinically-observed FOXA1 mutations upregulate SEMA3C through transcriptional derepression in prostate cancer.

Tam KJ, Liu L, Hsing M, Dalal K, Thaper D, McConeghy B, Yenki P, Bhasin S, Peacock JW, Wang Y, Cherkasov A, Rennie PS, Gleave ME, Ong CJ. Tam KJ, et al. Among authors: mcconeghy b. Sci Rep. 2024 Mar 25;14(1):7082. doi: 10.1038/s41598-024-57854-w. Sci Rep. 2024. PMID: 38528115 Free PMC article.

7

Well-Differentiated Papillary Mesothelioma of the Peritoneum Is Genetically Distinct from Malignant Mesothelioma.

Shrestha R, Nabavi N, Volik S, Anderson S, Haegert A, McConeghy B, Sar F, Brahmbhatt S, Bell R, Le Bihan S, Wang Y, Collins C, Churg A. Shrestha R, et al. Among authors: mcconeghy b. Cancers (Basel). 2020 Jun 13;12(6):1568. doi: 10.3390/cancers12061568. Cancers (Basel). 2020. PMID: 32545767 Free PMC article.

8

Characterization of the gut microbiome in a porcine model of thoracic spinal cord injury.

Doelman A, Tigchelaar S, McConeghy B, Sinha S, Keung MS, Manouchehri N, Webster M, Fisk S, Morrison C, Streijger F, Nislow C, Kwon BK. Doelman A, et al. Among authors: mcconeghy b. BMC Genomics. 2021 Oct 30;22(1):775. doi: 10.1186/s12864-021-07979-3. BMC Genomics. 2021. PMID: 34717545 Free PMC article.

9

Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA.

Gawroński AR, Lin YY, McConeghy B, LeBihan S, Asghari H, Koçkan C, Orabi B, Adra N, Pili R, Collins CC, Sahinalp SC, Hach F. Gawroński AR, et al. Among authors: mcconeghy b. Nucleic Acids Res. 2019 Apr 23;47(7):e38. doi: 10.1093/nar/gkz067. Nucleic Acids Res. 2019. PMID: 30759232 Free PMC article.

10

Multiomics Characterization of Low-Grade Serous Ovarian Carcinoma Identifies Potential Biomarkers of MEK Inhibitor Sensitivity and Therapeutic Vulnerability.

Shrestha R, Llaurado Fernandez M, Dawson A, Hoenisch J, Volik S, Lin YY, Anderson S, Kim H, Haegert AM, Colborne S, Wong NKY, McConeghy B, Bell RH, Brahmbhatt S, Lee CH, DiMattia GE, Le Bihan S, Morin GB, Collins CC, Carey MS. Shrestha R, et al. Among authors: mcconeghy b. Cancer Res. 2021 Apr 1;81(7):1681-1694. doi: 10.1158/0008-5472.CAN-20-2222. Epub 2021 Jan 13. Cancer Res. 2021. PMID: 33441310

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