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Year Number of Results
2016 1
2017 2
2020 2
2022 5
2023 11
2024 1

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21 results

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Page 1
The Promise and Pitfalls of Prophages.
McKerral JC, Papudeshi B, Inglis LK, Roach MJ, Decewicz P, McNair K, Luque A, Dinsdale EA, Edwards RA. McKerral JC, et al. Among authors: papudeshi b. bioRxiv [Preprint]. 2023 Apr 21:2023.04.20.537752. doi: 10.1101/2023.04.20.537752. bioRxiv. 2023. PMID: 37131798 Free PMC article. Preprint.
Ten simple rules and a template for creating workflows-as-applications.
Roach MJ, Pierce-Ward NT, Suchecki R, Mallawaarachchi V, Papudeshi B, Handley SA, Brown CT, Watson-Haigh NS, Edwards RA. Roach MJ, et al. Among authors: papudeshi b. PLoS Comput Biol. 2022 Dec 15;18(12):e1010705. doi: 10.1371/journal.pcbi.1010705. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36520686 Free PMC article. No abstract available.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: papudeshi b. Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. Bioinformatics. 2023. PMID: 37738590 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: papudeshi b. bioRxiv [Preprint]. 2023 Sep 11:2023.04.04.535632. doi: 10.1101/2023.04.04.535632. bioRxiv. 2023. PMID: 37066369 Free PMC article. Updated. Preprint.
Stingray epidermal microbiomes are species-specific with local adaptations.
Kerr EN, Papudeshi B, Haggerty M, Wild N, Goodman AZ, Lima LFO, Hesse RD, Skye A, Mallawaarachchi V, Johri S, Parker S, Dinsdale EA. Kerr EN, et al. Among authors: papudeshi b. Front Microbiol. 2023 Mar 2;14:1031711. doi: 10.3389/fmicb.2023.1031711. eCollection 2023. Front Microbiol. 2023. PMID: 36937279 Free PMC article.
Phage Diving: An Exploration of the Carcharhinid Shark Epidermal Virome.
Hesse RD, Roach M, Kerr EN, Papudeshi B, Lima LFO, Goodman AZ, Hoopes L, Scott M, Meyer L, Huveneers C, Dinsdale EA. Hesse RD, et al. Among authors: papudeshi b. Viruses. 2022 Sep 5;14(9):1969. doi: 10.3390/v14091969. Viruses. 2022. PMID: 36146775 Free PMC article.
Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome.
Doane MP, Reed MB, McKerral J, Farias Oliveira Lima L, Morris M, Goodman AZ, Johri S, Papudeshi B, Dillon T, Turnlund AC, Peterson M, Mora M, de la Parra Venegas R, Pillans R, Rohner CA, Pierce SJ, Legaspi CG, Araujo G, Ramirez-Macias D, Edwards RA, Dinsdale EA. Doane MP, et al. Among authors: papudeshi b. Sci Rep. 2023 Aug 7;13(1):12747. doi: 10.1038/s41598-023-39184-5. Sci Rep. 2023. PMID: 37550406 Free PMC article.
21 results