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AlphaFold predicts novel human proteins with knots.
Perlinska AP, Niemyska WH, Gren BA, Bukowicki M, Nowakowski S, Rubach P, Sulkowska JI. Perlinska AP, et al. Among authors: gren ba. Protein Sci. 2023 May;32(5):e4631. doi: 10.1002/pro.4631. Protein Sci. 2023. PMID: 36960558 Free PMC article.
Topoly: Python package to analyze topology of polymers.
Dabrowski-Tumanski P, Rubach P, Niemyska W, Gren BA, Sulkowska JI. Dabrowski-Tumanski P, et al. Among authors: gren ba. Brief Bioinform. 2021 May 20;22(3):bbaa196. doi: 10.1093/bib/bbaa196. Brief Bioinform. 2021. PMID: 32935829 Free PMC article.
Lasso Proteins-Unifying Cysteine Knots and Miniproteins.
Greń BA, Dabrowski-Tumanski P, Niemyska W, Sulkowska JI. Greń BA, et al. Polymers (Basel). 2021 Nov 18;13(22):3988. doi: 10.3390/polym13223988. Polymers (Basel). 2021. PMID: 34833285 Free PMC article.