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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2013 2
2014 3
2015 6
2016 4
2017 3
2018 5
2019 3
2020 5
2021 5
2022 6
2023 3
2024 1

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42 results

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Page 1
metaSPAdes: a new versatile metagenomic assembler.
Nurk S, Meleshko D, Korobeynikov A, Pevzner PA. Nurk S, et al. Among authors: korobeynikov a. Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15. Genome Res. 2017. PMID: 28298430 Free PMC article.
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. Meyer F, et al. Among authors: korobeynikov a. Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8. Nat Methods. 2022. PMID: 35396482 Free PMC article.
Petabase-scale sequence alignment catalyses viral discovery.
Edgar RC, Taylor B, Lin V, Altman T, Barbera P, Meleshko D, Lohr D, Novakovsky G, Buchfink B, Al-Shayeb B, Banfield JF, de la Peña M, Korobeynikov A, Chikhi R, Babaian A. Edgar RC, et al. Among authors: korobeynikov a. Nature. 2022 Feb;602(7895):142-147. doi: 10.1038/s41586-021-04332-2. Epub 2022 Jan 26. Nature. 2022. PMID: 35082445
Using SPAdes De Novo Assembler.
Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A. Prjibelski A, et al. Among authors: korobeynikov a. Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102. Curr Protoc Bioinformatics. 2020. PMID: 32559359
Protocol for refining metagenomic binning with BinSPreader.
Ochkalova S, Tolstoganov I, Lapidus A, Korobeynikov A. Ochkalova S, et al. Among authors: korobeynikov a. STAR Protoc. 2023 Sep 15;4(3):102417. doi: 10.1016/j.xpro.2023.102417. Epub 2023 Jul 4. STAR Protoc. 2023. PMID: 37405923 Free PMC article.
BinSPreader: Refine binning results for fuller MAG reconstruction.
Tolstoganov I, Kamenev Y, Kruglikov R, Ochkalova S, Korobeynikov A. Tolstoganov I, et al. Among authors: korobeynikov a. iScience. 2022 Jul 19;25(8):104770. doi: 10.1016/j.isci.2022.104770. eCollection 2022 Aug 19. iScience. 2022. PMID: 35992057 Free PMC article.
MGnify: the microbiome analysis resource in 2020.
Mitchell AL, Almeida A, Beracochea M, Boland M, Burgin J, Cochrane G, Crusoe MR, Kale V, Potter SC, Richardson LJ, Sakharova E, Scheremetjew M, Korobeynikov A, Shlemov A, Kunyavskaya O, Lapidus A, Finn RD. Mitchell AL, et al. Among authors: korobeynikov a. Nucleic Acids Res. 2020 Jan 8;48(D1):D570-D578. doi: 10.1093/nar/gkz1035. Nucleic Acids Res. 2020. PMID: 31696235 Free PMC article.
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
Bickhart DM, Kolmogorov M, Tseng E, Portik DM, Korobeynikov A, Tolstoganov I, Uritskiy G, Liachko I, Sullivan ST, Shin SB, Zorea A, Andreu VP, Panke-Buisse K, Medema MH, Mizrahi I, Pevzner PA, Smith TPL. Bickhart DM, et al. Among authors: korobeynikov a. Nat Biotechnol. 2022 May;40(5):711-719. doi: 10.1038/s41587-021-01130-z. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980911
MGnify: the microbiome sequence data analysis resource in 2023.
Richardson L, Allen B, Baldi G, Beracochea M, Bileschi ML, Burdett T, Burgin J, Caballero-Pérez J, Cochrane G, Colwell LJ, Curtis T, Escobar-Zepeda A, Gurbich TA, Kale V, Korobeynikov A, Raj S, Rogers AB, Sakharova E, Sanchez S, Wilkinson DJ, Finn RD. Richardson L, et al. Among authors: korobeynikov a. Nucleic Acids Res. 2023 Jan 6;51(D1):D753-D759. doi: 10.1093/nar/gkac1080. Nucleic Acids Res. 2023. PMID: 36477304 Free PMC article.
42 results