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Robust Analysis of Fluxes in Genome-Scale Metabolic Pathways.
MacGillivray M, Ko A, Gruber E, Sawyer M, Almaas E, Holder A. MacGillivray M, et al. Among authors: holder a. Sci Rep. 2017 Mar 21;7(1):268. doi: 10.1038/s41598-017-00170-3. Sci Rep. 2017. PMID: 28325918 Free PMC article.
Do genome-scale models need exact solvers or clearer standards?
Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. Ebrahim A, et al. Among authors: holder a. Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. Mol Syst Biol. 2015. PMID: 26467284 Free PMC article. No abstract available.
A spectral approach to protein structure alignment.
Shibberu Y, Holder A. Shibberu Y, et al. Among authors: holder a. IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):867-75. doi: 10.1109/TCBB.2011.24. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 21301031