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2016 | 1 |
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Page 1
MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.
Bioinformatics. 2018 Sep 15;34(18):3101-3110. doi: 10.1093/bioinformatics/bty208.
Bioinformatics. 2018.
PMID: 29617966
Free PMC article.
Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
Lin YY, Gawronski A, Hach F, Li S, Numanagic I, Sarrafi I, Mishra S, McPherson A, Collins CC, Radovich M, Tang H, Sahinalp SC.
Lin YY, et al. Among authors: gawronski a.
Bioinformatics. 2018 May 15;34(10):1672-1681. doi: 10.1093/bioinformatics/btx807.
Bioinformatics. 2018.
PMID: 29267878
Free PMC article.
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Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA.
Gawroński AR, Lin YY, McConeghy B, LeBihan S, Asghari H, Koçkan C, Orabi B, Adra N, Pili R, Collins CC, Sahinalp SC, Hach F.
Gawroński AR, et al.
Nucleic Acids Res. 2019 Apr 23;47(7):e38. doi: 10.1093/nar/gkz067.
Nucleic Acids Res. 2019.
PMID: 30759232
Free PMC article.
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Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression.
Zhang Y, Pitchiaya S, Cieślik M, Niknafs YS, Tien JC, Hosono Y, Iyer MK, Yazdani S, Subramaniam S, Shukla SK, Jiang X, Wang L, Liu TY, Uhl M, Gawronski AR, Qiao Y, Xiao L, Dhanasekaran SM, Juckette KM, Kunju LP, Cao X, Patel U, Batish M, Shukla GC, Paulsen MT, Ljungman M, Jiang H, Mehra R, Backofen R, Sahinalp CS, Freier SM, Watt AT, Guo S, Wei JT, Feng FY, Malik R, Chinnaiyan AM.
Zhang Y, et al. Among authors: gawronski ar.
Nat Genet. 2018 Jun;50(6):814-824. doi: 10.1038/s41588-018-0120-1. Epub 2018 May 28.
Nat Genet. 2018.
PMID: 29808028
Free PMC article.
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The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression.
Niknafs YS, Han S, Ma T, Speers C, Zhang C, Wilder-Romans K, Iyer MK, Pitchiaya S, Malik R, Hosono Y, Prensner JR, Poliakov A, Singhal U, Xiao L, Kregel S, Siebenaler RF, Zhao SG, Uhl M, Gawronski A, Hayes DF, Pierce LJ, Cao X, Collins C, Backofen R, Sahinalp CS, Rae JM, Chinnaiyan AM, Feng FY.
Niknafs YS, et al. Among authors: gawronski a.
Nat Commun. 2016 Sep 26;7:12791. doi: 10.1038/ncomms12791.
Nat Commun. 2016.
PMID: 27666543
Free PMC article.
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The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications.
Ramnarine VR, Alshalalfa M, Mo F, Nabavi N, Erho N, Takhar M, Shukin R, Brahmbhatt S, Gawronski A, Kobelev M, Nouri M, Lin D, Tsai H, Lotan TL, Karnes RJ, Rubin MA, Zoubeidi A, Gleave ME, Sahinalp C, Wyatt AW, Volik SV, Beltran H, Davicioni E, Wang Y, Collins CC.
Ramnarine VR, et al. Among authors: gawronski a.
Gigascience. 2018 Jun 1;7(6):giy050. doi: 10.1093/gigascience/giy050.
Gigascience. 2018.
PMID: 29757368
Free PMC article.
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GOAL: a software tool for assessing biological significance of genes groups.
Tchagang AB, Gawronski A, Bérubé H, Phan S, Famili F, Pan Y.
Tchagang AB, et al. Among authors: gawronski a.
BMC Bioinformatics. 2010 May 6;11:229. doi: 10.1186/1471-2105-11-229.
BMC Bioinformatics. 2010.
PMID: 20459620
Free PMC article.
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