Alan A. Chen - Search Results

Year	Number of Results
2007	2
2009	2
2012	1
2013	2
2016	4
2017	2
2019	2
2020	3
2021	2
2022	2
2023	3
2024	2

1

Toehold clipping: A mechanism for remote control of DNA strand displacement.

Faheem H, Mathivanan J, Talbot H, Zeghal H, Vangaveti S, Sheng J, Chen AA, Chandrasekaran AR. Faheem H, et al. Among authors: chen aa. Nucleic Acids Res. 2023 May 8;51(8):4055-4063. doi: 10.1093/nar/gkac1152. Nucleic Acids Res. 2023. PMID: 36477864 Free PMC article.

2

Challenges with Simulating Modified RNA: Insights into Role and Reciprocity of Experimental and Computational Approaches.

D'Esposito RJ, Myers CA, Chen AA, Vangaveti S. D'Esposito RJ, et al. Among authors: chen aa. Genes (Basel). 2022 Mar 18;13(3):540. doi: 10.3390/genes13030540. Genes (Basel). 2022. PMID: 35328093 Free PMC article. Review.

3

Free-energy landscape of a hyperstable RNA tetraloop.

Miner JC, Chen AA, García AE. Miner JC, et al. Among authors: chen aa. Proc Natl Acad Sci U S A. 2016 Jun 14;113(24):6665-70. doi: 10.1073/pnas.1603154113. Epub 2016 May 27. Proc Natl Acad Sci U S A. 2016. PMID: 27233937 Free PMC article.

4

Hybrid DNA/RNA nanostructures with 2'-5' linkages.

Chandrasekaran AR , Mathivanan J , Ebrahimi P , Vilcapoma J , Chen AA , Halvorsen K , Sheng J . Chandrasekaran AR , et al. Among authors: chen aa. Nanoscale. 2020 Nov 5;12(42):21583-21590. doi: 10.1039/d0nr05846g. Nanoscale. 2020. PMID: 33089274 Free PMC article.

5

Advances in RNA molecular dynamics: a simulator's guide to RNA force fields.

Vangaveti S, Ranganathan SV, Chen AA. Vangaveti S, et al. Among authors: chen aa. Wiley Interdiscip Rev RNA. 2017 Mar;8(2). doi: 10.1002/wrna.1396. Epub 2016 Oct 4. Wiley Interdiscip Rev RNA. 2017. PMID: 27704698 Review.

6

Characterizing the Folding Transition-State Ensembles in the Energy Landscape of an RNA Tetraloop.

Viegas RG, Sanches MN, Chen AA, Paulovich FV, Garcia AE, Leite VBP. Viegas RG, et al. Among authors: chen aa. J Chem Inf Model. 2023 Sep 11;63(17):5641-5649. doi: 10.1021/acs.jcim.3c00426. Epub 2023 Aug 22. J Chem Inf Model. 2023. PMID: 37606640

7

High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations.

Chen AA, García AE. Chen AA, et al. Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16820-5. doi: 10.1073/pnas.1309392110. Epub 2013 Sep 16. Proc Natl Acad Sci U S A. 2013. PMID: 24043821 Free PMC article. Review.

8

Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch.

Cheng L, White EN, Brandt NL, Yu AM, Chen AA, Lucks JB. Cheng L, et al. Among authors: chen aa. Nucleic Acids Res. 2022 Nov 28;50(21):12001-12018. doi: 10.1093/nar/gkac102. Nucleic Acids Res. 2022. PMID: 35348734 Free PMC article.

9

tRNA Modification Detection Using Graphene Nanopores: A Simulation Study.

Onanuga K, Begley TJ, Chen AA, Ranganathan SV. Onanuga K, et al. Among authors: chen aa. Biomolecules. 2017 Aug 25;7(3):65. doi: 10.3390/biom7030065. Biomolecules. 2017. PMID: 32962315 Free PMC article.

10

Base-pair conformational switch modulates miR-34a targeting of Sirt1 mRNA.

Baronti L, Guzzetti I, Ebrahimi P, Friebe Sandoz S, Steiner E, Schlagnitweit J, Fromm B, Silva L, Fontana C, Chen AA, Petzold K. Baronti L, et al. Among authors: chen aa. Nature. 2020 Jul;583(7814):139-144. doi: 10.1038/s41586-020-2336-3. Epub 2020 May 27. Nature. 2020. PMID: 32461691

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