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Four simple recommendations to encourage best practices in research software.
Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Jiménez RC, et al. Among authors: katz ds. F1000Res. 2017 Jun 13;6:ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017. F1000Res. 2017. PMID: 28751965 Free PMC article.
Recognizing the value of software: a software citation guide.
Katz DS, Chue Hong NP, Clark T, Muench A, Stall S, Bouquin D, Cannon M, Edmunds S, Faez T, Feeney P, Fenner M, Friedman M, Grenier G, Harrison M, Heber J, Leary A, MacCallum C, Murray H, Pastrana E, Perry K, Schuster D, Stockhause M, Yeston J. Katz DS, et al. F1000Res. 2020 Oct 19;9:1257. doi: 10.12688/f1000research.26932.2. eCollection 2020. F1000Res. 2020. PMID: 33500780 Free PMC article.
Introducing the FAIR Principles for research software.
Barker M, Chue Hong NP, Katz DS, Lamprecht AL, Martinez-Ortiz C, Psomopoulos F, Harrow J, Castro LJ, Gruenpeter M, Martinez PA, Honeyman T. Barker M, et al. Among authors: katz ds. Sci Data. 2022 Oct 14;9(1):622. doi: 10.1038/s41597-022-01710-x. Sci Data. 2022. PMID: 36241754 Free PMC article.
Journal Production Guidance for Software and Data Citations.
Stall S, Bilder G, Cannon M, Chue Hong N, Edmunds S, Erdmann CC, Evans M, Farmer R, Feeney P, Friedman M, Giampoala M, Hanson RB, Harrison M, Karaiskos D, Katz DS, Letizia V, Lizzi V, MacCallum C, Muench A, Perry K, Ratner H, Schindler U, Sedora B, Stockhause M, Townsend R, Yeston J, Clark T. Stall S, et al. Among authors: katz ds. Sci Data. 2023 Sep 26;10(1):656. doi: 10.1038/s41597-023-02491-7. Sci Data. 2023. PMID: 37752153 Free PMC article.
Journal of Open Source Software (JOSS): design and first-year review.
Smith AM, Niemeyer KE, Katz DS, Barba LA, Githinji G, Gymrek M, Huff KD, Madan CR, Mayes AC, Moerman KM, Prins P, Ram K, Rokem A, Teal TK, Guimera RV, Vanderplas JT. Smith AM, et al. Among authors: katz ds. PeerJ Prepr. 2018;4:e147. doi: 10.7717/peerj-cs.147. Epub 2018 Feb 12. PeerJ Prepr. 2018. PMID: 32704456 Free PMC article.
FAIR-USE4OS: Guidelines for creating impactful open-source software.
Sonabend R, Gruson H, Wolansky L, Kiragga A, Katz DS. Sonabend R, et al. Among authors: katz ds. PLoS Comput Biol. 2024 May 9;20(5):e1012045. doi: 10.1371/journal.pcbi.1012045. eCollection 2024 May. PLoS Comput Biol. 2024. PMID: 38722873 Free PMC article.
331 results