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Connectome-driven neural inventory of a complete visual system.
Nern A, Lösche F, Takemura SY, Burnett LE, Dreher M, Gruntman E, Hoeller J, Huang GB, Januszewski M, Klapoetke NC, Koskela S, Longden KD, Lu Z, Preibisch S, Qiu W, Rogers EM, Seenivasan P, Zhao A, Bogovic J, Canino BS, Clements J, Cook M, Finley-May S, Flynn MA, Hameed I, Hayworth KJ, Hopkins GP, Hubbard PM, Katz WT, Kovalyak J, Lauchie SA, Leonard M, Lohff A, Maldonado CA, Mooney C, Okeoma N, Olbris DJ, Ordish C, Paterson T, Phillips EM, Pietzsch T, Salinas JR, Rivlin PK, Scott AL, Scuderi LA, Takemura S, Talebi I, Thomson A, Trautman ET, Umayam L, Walsh C, Walsh JJ, Shan Xu C, Yakal EA, Yang T, Zhao T, Funke J, George R, Hess HF, Jefferis GS, Knecht C, Korff W, Plaza SM, Romani S, Saalfeld S, Scheffer LK, Berg S, Rubin GM, Reiser MB. Nern A, et al. Among authors: funke j. bioRxiv [Preprint]. 2024 Apr 18:2024.04.16.589741. doi: 10.1101/2024.04.16.589741. bioRxiv. 2024. PMID: 38659887 Free PMC article. Preprint.
Structured cerebellar connectivity supports resilient pattern separation.
Nguyen TM, Thomas LA, Rhoades JL, Ricchi I, Yuan XC, Sheridan A, Hildebrand DGC, Funke J, Regehr WG, Lee WA. Nguyen TM, et al. Among authors: funke j. Nature. 2023 Jan;613(7944):543-549. doi: 10.1038/s41586-022-05471-w. Epub 2022 Nov 23. Nature. 2023. PMID: 36418404 Free PMC article.
Analyzing Image Segmentation for Connectomics.
Plaza SM, Funke J. Plaza SM, et al. Among authors: funke j. Front Neural Circuits. 2018 Nov 13;12:102. doi: 10.3389/fncir.2018.00102. eCollection 2018. Front Neural Circuits. 2018. PMID: 30483069 Free PMC article.
Whole-cell organelle segmentation in volume electron microscopy.
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, Xu CS, Funke J, Korff W, Hess HF, Lippincott-Schwartz J, Saalfeld S, Weigel AV; COSEM Project Team. Heinrich L, et al. Among authors: funke j. Nature. 2021 Nov;599(7883):141-146. doi: 10.1038/s41586-021-03977-3. Epub 2021 Oct 6. Nature. 2021. PMID: 34616042
A leaky integrate-and-fire computational model based on the connectome of the entire adult Drosophila brain reveals insights into sensorimotor processing.
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CH, Yu S, Kim JS, Dorkenwald S, Matsliah A, Schlegel P, Szi-Chieh Y, McKellar CE, Sterling A, Costa M, Eichler K, Jefferis GSXE, Murthy M, Bates AS, Eckstein N, Funke J, Bidaye SS, Hampel S, Seeds AM, Scott K. Shiu PK, et al. Among authors: funke j. bioRxiv [Preprint]. 2023 May 2:2023.05.02.539144. doi: 10.1101/2023.05.02.539144. bioRxiv. 2023. PMID: 37205514 Free PMC article. Preprint.
Network Statistics of the Whole-Brain Connectome of Drosophila.
Lin A, Yang R, Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Costa M, Eichler K, Bates AS, Eckstein N, Funke J, Jefferis GSXE, Murthy M. Lin A, et al. Among authors: funke j. bioRxiv [Preprint]. 2024 Feb 28:2023.07.29.551086. doi: 10.1101/2023.07.29.551086. bioRxiv. 2024. PMID: 37547019 Free PMC article. Preprint.
Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster.
Eckstein N, Bates AS, Champion A, Du M, Yin Y, Schlegel P, Lu AK, Rymer T, Finley-May S, Paterson T, Parekh R, Dorkenwald S, Matsliah A, Yu SC, McKellar C, Sterling A, Eichler K, Costa M, Seung S, Murthy M, Hartenstein V, Jefferis GSXE, Funke J. Eckstein N, et al. Among authors: funke j. Cell. 2024 May 9;187(10):2574-2594.e23. doi: 10.1016/j.cell.2024.03.016. Cell. 2024. PMID: 38729112 Free PMC article.
Neural network organization for courtship-song feature detection in Drosophila.
Baker CA, McKellar C, Pang R, Nern A, Dorkenwald S, Pacheco DA, Eckstein N, Funke J, Dickson BJ, Murthy M. Baker CA, et al. Among authors: funke j. Curr Biol. 2022 Aug 8;32(15):3317-3333.e7. doi: 10.1016/j.cub.2022.06.019. Epub 2022 Jul 5. Curr Biol. 2022. PMID: 35793679 Free PMC article.
88 results