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A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens.
Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P. Sahl JW, et al. Among authors: okinaka r. mBio. 2016 Sep 27;7(5):e01501-16. doi: 10.1128/mBio.01501-16. mBio. 2016. PMID: 27677796 Free PMC article.
The Phylogeny of Bacillus cereus sensu lato.
Okinaka RT, Keim P. Okinaka RT, et al. Microbiol Spectr. 2016 Feb;4(1). doi: 10.1128/microbiolspec.TBS-0012-2012. Microbiol Spectr. 2016. PMID: 26999390 Free article.
Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates.
Spring-Pearson SM, Stone JK, Doyle A, Allender CJ, Okinaka RT, Mayo M, Broomall SM, Hill JM, Karavis MA, Hubbard KS, Insalaco JM, McNew LA, Rosenzweig CN, Gibbons HS, Currie BJ, Wagner DM, Keim P, Tuanyok A. Spring-Pearson SM, et al. Among authors: okinaka rt. PLoS One. 2015 Oct 20;10(10):e0140274. doi: 10.1371/journal.pone.0140274. eCollection 2015. PLoS One. 2015. PMID: 26484663 Free PMC article.
Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes.
Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, Abazashvili N, Kekelidze M, Tsanava S, Imnadze P, Ganz HH, Getz WM, Pearson O, Gajer P, Eppinger M, Ravel J, Wagner DM, Okinaka RT, Schupp JM, Keim P, Pearson T. Khmaladze E, et al. Among authors: okinaka rt. PLoS One. 2014 Jul 21;9(7):e102651. doi: 10.1371/journal.pone.0102651. eCollection 2014. PLoS One. 2014. PMID: 25047912 Free PMC article.
Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe.
Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, Vipond R, Foster JT, Bergman NH, Burans J, Pearson T, Brooks T, Keim P. Price EP, et al. Among authors: okinaka rt. Emerg Infect Dis. 2012 Aug;18(8):1307-13. doi: 10.3201/eid1808.111343. Emerg Infect Dis. 2012. PMID: 22840345 Free PMC article.
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.
Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, Pearson O, Wu Z, Chang J, Kaul R, Hoffmaster AR, Brettin TS, Robison RA, Mayo M, Gee JE, Tan P, Currie BJ, Keim P. Pearson T, et al. Among authors: okinaka rt. BMC Biol. 2009 Nov 18;7:78. doi: 10.1186/1741-7007-7-78. BMC Biol. 2009. PMID: 19922616 Free PMC article.
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