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Comparative genomics of macaques and integrated insights into genetic variation and population history.
Zhang S, Xu N, Fu L, Yang X, Li Y, Yang Z, Feng Y, Ma K, Jiang X, Han J, Hu R, Zhang L, de Gennaro L, Ryabov F, Meng D, He Y, Wu D, Yang C, Paparella A, Mao Y, Bian X, Lu Y, Antonacci F, Ventura M, Shepelev VA, Miga KH, Alexandrov IA, Logsdon GA, Phillippy AM, Su B, Zhang G, Eichler EE, Lu Q, Shi Y, Sun Q, Mao Y. Zhang S, et al. Among authors: antonacci f. bioRxiv [Preprint]. 2024 Apr 8:2024.04.07.588379. doi: 10.1101/2024.04.07.588379. bioRxiv. 2024. PMID: 38645259 Free PMC article. Preprint.
The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.
Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, Bomberg E, Bouffard GG, Brooks SY, Carbone L, Carrel L, Carroll A, Chang PC, Chin CS, Cook DE, Craig SJC, de Gennaro L, Diekhans M, Dutra A, Garcia GH, Grady PGS, Green RE, Haddad D, Hallast P, Harvey WT, Hickey G, Hillis DA, Hoyt SJ, Jeong H, Kamali K, Kosakovsky Pond SL, LaPolice TM, Lee C, Lewis AP, Loh YE, Masterson P, McCoy RC, Medvedev P, Miga KH, Munson KM, Pak E, Paten B, Pinto BJ, Potapova T, Rhie A, Rocha JL, Ryabov F, Ryder OA, Sacco S, Shafin K, Shepelev VA, Slon V, Solar SJ, Storer JM, Sudmant PH, Sweetalana, Sweeten A, Tassia MG, Thibaud-Nissen F, Ventura M, Wilson MA, Young AC, Zeng H, Zhang X, Szpiech ZA, Huber CD, Gerton JL, Yi SV, Schatz MC, Alexandrov IA, Koren S, O'Neill RJ, Eichler E, Phillippy AM. Makova KD, et al. Among authors: antonacci f. bioRxiv [Preprint]. 2023 Dec 1:2023.11.30.569198. doi: 10.1101/2023.11.30.569198. bioRxiv. 2023. PMID: 38077089 Free PMC article. Preprint.
Special Issue: A Tale of Genes and Genomes.
Ventura M, Antonacci F. Ventura M, et al. Among authors: antonacci f. Genes (Basel). 2021 May 19;12(5):774. doi: 10.3390/genes12050774. Genes (Basel). 2021. PMID: 34069634 Free PMC article.
Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus.
Paparella A, L'Abbate A, Palmisano D, Chirico G, Porubsky D, Catacchio CR, Ventura M, Eichler EE, Maggiolini FAM, Antonacci F. Paparella A, et al. Among authors: antonacci f. Int J Mol Sci. 2023 Oct 31;24(21):15818. doi: 10.3390/ijms242115818. Int J Mol Sci. 2023. PMID: 37958807 Free PMC article.
Programmed loss of millions of base pairs from a vertebrate genome.
Smith JJ, Antonacci F, Eichler EE, Amemiya CT. Smith JJ, et al. Among authors: antonacci f. Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11212-7. doi: 10.1073/pnas.0902358106. Epub 2009 Jun 26. Proc Natl Acad Sci U S A. 2009. PMID: 19561299 Free PMC article.
Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution.
Maggiolini FAM, Sanders AD, Shew CJ, Sulovari A, Mao Y, Puig M, Catacchio CR, Dellino M, Palmisano D, Mercuri L, Bitonto M, Porubský D, Cáceres M, Eichler EE, Ventura M, Dennis MY, Korbel JO, Antonacci F. Maggiolini FAM, et al. Among authors: antonacci f. Genome Res. 2020 Nov;30(11):1680-1693. doi: 10.1101/gr.265322.120. Epub 2020 Oct 22. Genome Res. 2020. PMID: 33093070 Free PMC article.
Inversion variants in human and primate genomes.
Catacchio CR, Maggiolini FAM, D'Addabbo P, Bitonto M, Capozzi O, Lepore Signorile M, Miroballo M, Archidiacono N, Eichler EE, Ventura M, Antonacci F. Catacchio CR, et al. Among authors: antonacci f. Genome Res. 2018 Jun;28(6):910-920. doi: 10.1101/gr.234831.118. Epub 2018 May 18. Genome Res. 2018. PMID: 29776991 Free PMC article.
Hominoid fission of chromosome 14/15 and the role of segmental duplications.
Giannuzzi G, Pazienza M, Huddleston J, Antonacci F, Malig M, Vives L, Eichler EE, Ventura M. Giannuzzi G, et al. Among authors: antonacci f. Genome Res. 2013 Nov;23(11):1763-73. doi: 10.1101/gr.156240.113. Epub 2013 Sep 27. Genome Res. 2013. PMID: 24077392 Free PMC article.
The birth of a human-specific neural gene by incomplete duplication and gene fusion.
Dougherty ML, Nuttle X, Penn O, Nelson BJ, Huddleston J, Baker C, Harshman L, Duyzend MH, Ventura M, Antonacci F, Sandstrom R, Dennis MY, Eichler EE. Dougherty ML, et al. Among authors: antonacci f. Genome Biol. 2017 Mar 9;18(1):49. doi: 10.1186/s13059-017-1163-9. Genome Biol. 2017. PMID: 28279197 Free PMC article.
87 results