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RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO.
Marino GB, Clarke DJB, Deng EZ, Ma'ayan A. Marino GB, et al. Among authors: clarke djb. bioRxiv [Preprint]. 2024 Apr 13:2024.04.09.588712. doi: 10.1101/2024.04.09.588712. bioRxiv. 2024. PMID: 38645198 Free PMC article. Preprint.
lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.
Marino GB, Wojciechowicz ML, Clarke DJB, Kuleshov MV, Xie Z, Jeon M, Lachmann A, Ma'ayan A. Marino GB, et al. Among authors: clarke djb. Database (Oxford). 2023 Mar 4;2023:baad009. doi: 10.1093/database/baad009. Database (Oxford). 2023. PMID: 36869839 Free PMC article.
Enrichr-KG: bridging enrichment analysis across multiple libraries.
Evangelista JE, Xie Z, Marino GB, Nguyen N, Clarke DJB, Ma'ayan A. Evangelista JE, et al. Among authors: clarke djb. Nucleic Acids Res. 2023 Jul 5;51(W1):W168-W179. doi: 10.1093/nar/gkad393. Nucleic Acids Res. 2023. PMID: 37166973 Free PMC article.
D2H2: diabetes data and hypothesis hub.
Marino GB, Ahmed N, Xie Z, Jagodnik KM, Han J, Clarke DJB, Lachmann A, Keller MP, Attie AD, Ma'ayan A. Marino GB, et al. Among authors: clarke djb. Bioinform Adv. 2023 Dec 4;3(1):vbad178. doi: 10.1093/bioadv/vbad178. eCollection 2023. Bioinform Adv. 2023. PMID: 38107655 Free PMC article.
Toxicology knowledge graph for structural birth defects.
Evangelista JE, Clarke DJB, Xie Z, Marino GB, Utti V, Jenkins SL, Ahooyi TM, Bologa CG, Yang JJ, Binder JL, Kumar P, Lambert CG, Grethe JS, Wenger E, Taylor D, Oprea TI, de Bono B, Ma'ayan A. Evangelista JE, et al. Among authors: clarke djb. Commun Med (Lond). 2023 Jul 17;3(1):98. doi: 10.1038/s43856-023-00329-2. Commun Med (Lond). 2023. PMID: 37460679 Free PMC article.
33 results