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Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR. Czajka JJ, et al. Among authors: magnuson jk. Front Bioeng Biotechnol. 2024 Apr 4;12:1356551. doi: 10.3389/fbioe.2024.1356551. eCollection 2024. Front Bioeng Biotechnol. 2024. PMID: 38638323 Free PMC article.
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: magnuson jk. Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115. Epub 2018 Jan 9. Proc Natl Acad Sci U S A. 2018. PMID: 29317534 Free PMC article.
Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides.
Kim J, Coradetti ST, Kim YM, Gao Y, Yaegashi J, Zucker JD, Munoz N, Zink EM, Burnum-Johnson KE, Baker SE, Simmons BA, Skerker JM, Gladden JM, Magnuson JK. Kim J, et al. Among authors: magnuson jk. Front Bioeng Biotechnol. 2021 Jan 8;8:612832. doi: 10.3389/fbioe.2020.612832. eCollection 2020. Front Bioeng Biotechnol. 2021. PMID: 33585414 Free PMC article.
Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus.
Pomraning KR, Dai Z, Munoz N, Kim YM, Gao Y, Deng S, Kim J, Hofstad BA, Swita MS, Lemmon T, Collett JR, Panisko EA, Webb-Robertson BM, Zucker JD, Nicora CD, De Paoli H, Baker SE, Burnum-Johnson KE, Hillson NJ, Magnuson JK. Pomraning KR, et al. Among authors: magnuson jk. Front Bioeng Biotechnol. 2021 Apr 7;9:603832. doi: 10.3389/fbioe.2021.603832. eCollection 2021. Front Bioeng Biotechnol. 2021. PMID: 33898398 Free PMC article.
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.
Vesth TC, Nybo JL, Theobald S, Frisvad JC, Larsen TO, Nielsen KF, Hoof JB, Brandl J, Salamov A, Riley R, Gladden JM, Phatale P, Nielsen MT, Lyhne EK, Kogle ME, Strasser K, McDonnell E, Barry K, Clum A, Chen C, LaButti K, Haridas S, Nolan M, Sandor L, Kuo A, Lipzen A, Hainaut M, Drula E, Tsang A, Magnuson JK, Henrissat B, Wiebenga A, Simmons BA, Mäkelä MR, de Vries RP, Grigoriev IV, Mortensen UH, Baker SE, Andersen MR. Vesth TC, et al. Among authors: magnuson jk. Nat Genet. 2018 Dec;50(12):1688-1695. doi: 10.1038/s41588-018-0246-1. Epub 2018 Oct 22. Nat Genet. 2018. PMID: 30349117
Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica.
Pomraning KR, Bredeweg EL, Kerkhoven EJ, Barry K, Haridas S, Hundley H, LaButti K, Lipzen A, Yan M, Magnuson JK, Simmons BA, Grigoriev IV, Nielsen J, Baker SE. Pomraning KR, et al. Among authors: magnuson jk. mSphere. 2018 Dec 5;3(6):e00541-18. doi: 10.1128/mSphere.00541-18. mSphere. 2018. PMID: 30518677 Free PMC article.
A comparative genomics study of 23 Aspergillus species from section Flavi.
Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: magnuson jk. Nat Commun. 2020 Feb 27;11(1):1106. doi: 10.1038/s41467-019-14051-y. Nat Commun. 2020. PMID: 32107379 Free PMC article.
68 results