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A chromosomal-scale genome assembly of modern cultivated hybrid sugarcane provides insights into origination and evolution.
Bao Y, Zhang Q, Huang J, Zhang S, Yao W, Yu Z, Deng Z, Yu J, Kong W, Yu X, Lu S, Wang Y, Li R, Song Y, Zou C, Xu Y, Liu Z, Yu F, Song J, Huang Y, Zhang J, Wang H, Chen B, Zhang X, Zhang M. Bao Y, et al. Among authors: song j, song y. Nat Commun. 2024 Apr 8;15(1):3041. doi: 10.1038/s41467-024-47390-6. Nat Commun. 2024. PMID: 38589412 Free PMC article.
Two haplotype-resolved genome assemblies for AAB allotriploid bananas provide insights into banana subgenome asymmetric evolution and Fusarium wilt control.
Xie WZ, Zheng YY, He W, Bi F, Li Y, Dou T, Zhou R, Guo YX, Deng G, Zhang W, Yuan MH, Sanz-Jimenez P, Zhu XT, Xu XD, Zhou ZW, Zhou ZW, Feng JW, Liu S, Li C, Yang Q, Hu C, Gao H, Dong T, Dang J, Guo Q, Cai W, Zhang J, Yi G, Song JM, Sheng O, Chen LL. Xie WZ, et al. Among authors: song jm. Plant Commun. 2024 Feb 12;5(2):100766. doi: 10.1016/j.xplc.2023.100766. Epub 2023 Nov 15. Plant Commun. 2024. PMID: 37974402 Free PMC article.
Genome structural evolution in Brassica crops.
He Z, Ji R, Havlickova L, Wang L, Li Y, Lee HT, Song J, Koh C, Yang J, Zhang M, Parkin IAP, Wang X, Edwards D, King GJ, Zou J, Liu K, Snowdon RJ, Banga SS, Machackova I, Bancroft I. He Z, et al. Among authors: song j. Nat Plants. 2021 Jun;7(6):757-765. doi: 10.1038/s41477-021-00928-8. Epub 2021 May 27. Nat Plants. 2021. PMID: 34045706
High-quality genome assemblies for two Australimusa bananas (Musa spp.) and insights into regulatory mechanisms of superior fiber properties.
Zhou R, Wang S, Zhan N, He W, Deng G, Dou T, Zhu XT, Xie WZ, Zheng YY, Hu C, Bi F, Gao H, Dong T, Liu S, Li C, Yang Q, Wang L, Song JM, Dang J, Guo Q, Yi G, Chen LL, Sheng O. Zhou R, et al. Among authors: song jm. Plant Commun. 2024 Jan 8;5(1):100681. doi: 10.1016/j.xplc.2023.100681. Epub 2023 Sep 3. Plant Commun. 2024. PMID: 37660253 Free PMC article.
Contributions of Zea mays subspecies mexicana haplotypes to modern maize.
Yang N, Xu XW, Wang RR, Peng WL, Cai L, Song JM, Li W, Luo X, Niu L, Wang Y, Jin M, Chen L, Luo J, Deng M, Wang L, Pan Q, Liu F, Jackson D, Yang X, Chen LL, Yan J. Yang N, et al. Among authors: song jm. Nat Commun. 2017 Nov 30;8(1):1874. doi: 10.1038/s41467-017-02063-5. Nat Commun. 2017. PMID: 29187731 Free PMC article.
High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height.
Wang S, Xiao Y, Zhou ZW, Yuan J, Guo H, Yang Z, Yang J, Sun P, Sun L, Deng Y, Xie WZ, Song JM, Qamar MTU, Xia W, Liu R, Gong S, Wang Y, Wang F, Liu X, Fernie AR, Wang X, Fan H, Chen LL, Luo J. Wang S, et al. Among authors: song jm. Genome Biol. 2021 Nov 4;22(1):304. doi: 10.1186/s13059-021-02522-9. Genome Biol. 2021. PMID: 34736486 Free PMC article.
Oil plant genomes: current state of the science.
Song JM, Zhang Y, Zhou ZW, Lu S, Ma W, Lu C, Chen LL, Guo L. Song JM, et al. J Exp Bot. 2022 May 13;73(9):2859-2874. doi: 10.1093/jxb/erab472. J Exp Bot. 2022. PMID: 35560205 Review.
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