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Unraveling the evolutionary origin of the complex Nuclear Receptor Element (cNRE), a cis-regulatory module required for preferential expression in the atrial chamber.
Nunes Santos L, Sousa Costa ÂM, Nikolov M, Carvalho JE, Coelho Sampaio A, Stockdale FE, Wang GF, Andrade Castillo H, Bortoletto Grizante M, Dudczig S, Vasconcelos M, Rosenthal N, Jusuf PR, Nim HT, de Oliveira P, Guimarães de Freitas Matos T, Nikovits W Jr, Tambones IL, Figueira ACM, Schubert M, Ramialison M, Xavier-Neto J. Nunes Santos L, et al. Among authors: de oliveira p. Commun Biol. 2024 Apr 4;7(1):371. doi: 10.1038/s42003-024-05972-6. Commun Biol. 2024. PMID: 38575811 Free PMC article.
KVFinder: steered identification of protein cavities as a PyMOL plugin.
Oliveira SH, Ferraz FA, Honorato RV, Xavier-Neto J, Sobreira TJ, de Oliveira PS. Oliveira SH, et al. Among authors: de oliveira ps. BMC Bioinformatics. 2014 Jun 17;15:197. doi: 10.1186/1471-2105-15-197. BMC Bioinformatics. 2014. PMID: 24938294 Free PMC article.
Structural shifts of aldehyde dehydrogenase enzymes were instrumental for the early evolution of retinoid-dependent axial patterning in metazoans.
Sobreira TJ, Marlétaz F, Simões-Costa M, Schechtman D, Pereira AC, Brunet F, Sweeney S, Pani A, Aronowicz J, Lowe CJ, Davidson B, Laudet V, Bronner M, de Oliveira PS, Schubert M, Xavier-Neto J. Sobreira TJ, et al. Among authors: de oliveira ps. Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):226-31. doi: 10.1073/pnas.1011223108. Epub 2010 Dec 17. Proc Natl Acad Sci U S A. 2011. PMID: 21169504 Free PMC article.
Structural analysis of TrkA mutations in patients with congenital insensitivity to pain reveals PLCγ as an analgesic drug target.
Moraes BC, Ribeiro-Filho HV, Roldão AP, Toniolo EF, Carretero GPB, Sgro GG, Batista FAH, Berardi DE, Oliveira VRS, Tomasin R, Vieceli FM, Pramio DT, Cardoso AB, Figueira ACM, Farah SC, Devi LA, Dale CS, de Oliveira PSL, Schechtman D. Moraes BC, et al. Among authors: oliveira vrs, de oliveira psl. Sci Signal. 2022 Apr 26;15(731):eabm6046. doi: 10.1126/scisignal.abm6046. Epub 2022 Apr 26. Sci Signal. 2022. PMID: 35471943
Structural insights into functional overlapping and differentiation among myosin V motors.
Nascimento AFZ, Trindade DM, Tonoli CCC, de Giuseppe PO, Assis LHP, Honorato RV, de Oliveira PSL, Mahajan P, Burgess-Brown NA, von Delft F, Larson RE, Murakami MT. Nascimento AFZ, et al. Among authors: de giuseppe po, de oliveira psl. J Biol Chem. 2013 Nov 22;288(47):34131-34145. doi: 10.1074/jbc.M113.507202. Epub 2013 Oct 4. J Biol Chem. 2013. PMID: 24097982 Free PMC article.
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.
Dias Neto E, Correa RG, Verjovski-Almeida S, Briones MR, Nagai MA, da Silva W Jr, Zago MA, Bordin S, Costa FF, Goldman GH, Carvalho AF, Matsukuma A, Baia GS, Simpson DH, Brunstein A, de Oliveira PS, Bucher P, Jongeneel CV, O'Hare MJ, Soares F, Brentani RR, Reis LF, de Souza SJ, Simpson AJ. Dias Neto E, et al. Among authors: de souza sj, de oliveira ps. Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3491-6. doi: 10.1073/pnas.97.7.3491. Proc Natl Acad Sci U S A. 2000. PMID: 10737800 Free PMC article.
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