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Detailed analysis of a contiguous 22-Mb region of the maize genome.
Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA. Wei F, et al. Among authors: zhang l, zhang j. PLoS Genet. 2009 Nov;5(11):e1000728. doi: 10.1371/journal.pgen.1000728. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936048 Free PMC article.
The physical and genetic framework of the maize B73 genome.
Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, Schwartz DC, Ware D, Clifton SW, Wilson RK, Wing RA. Wei F, et al. Among authors: zhang j. PLoS Genet. 2009 Nov;5(11):e1000715. doi: 10.1371/journal.pgen.1000715. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936061 Free PMC article.
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.
Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, Ouyang Y, Sun S, Jiao WB, Lv F, Du B, Luo M, Maldonado CE, Goicoechea JL, Xiong L, Wu C, Xing Y, Zhou DX, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Zhou ZW, Hurtado BE, Danowitz A, Wing RA, Zhang Q. Zhang J, et al. Among authors: zhang cl, zhang q. Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):E5163-71. doi: 10.1073/pnas.1611012113. Epub 2016 Aug 17. Proc Natl Acad Sci U S A. 2016. PMID: 27535938 Free PMC article.
Genome-wide association mapping of date palm fruit traits.
Hazzouri KM, Gros-Balthazard M, Flowers JM, Copetti D, Lemansour A, Lebrun M, Masmoudi K, Ferrand S, Dhar MI, Fresquez ZA, Rosas U, Zhang J, Talag J, Lee S, Kudrna D, Powell RF, Leitch IJ, Krueger RR, Wing RA, Amiri KMA, Purugganan MD. Hazzouri KM, et al. Among authors: zhang j. Nat Commun. 2019 Oct 15;10(1):4680. doi: 10.1038/s41467-019-12604-9. Nat Commun. 2019. PMID: 31615981 Free PMC article.
Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels.
Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, Kudrna D, Wing R, Yano K, Nonomura KI, Sato Y, Kurata N. Shenton M, et al. Among authors: zhang j. Genome Biol Evol. 2020 Apr 1;12(4):413-428. doi: 10.1093/gbe/evaa037. Genome Biol Evol. 2020. PMID: 32125373 Free PMC article.
A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes.
Paritosh K, Yadava SK, Singh P, Bhayana L, Mukhopadhyay A, Gupta V, Bisht NC, Zhang J, Kudrna DA, Copetti D, Wing RA, Reddy Lachagari VB, Pradhan AK, Pental D. Paritosh K, et al. Among authors: zhang j. Plant Biotechnol J. 2021 Mar;19(3):602-614. doi: 10.1111/pbi.13492. Epub 2020 Dec 30. Plant Biotechnol J. 2021. PMID: 33073461 Free PMC article.
The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis.
Wu Z, Liu H, Zhan W, Yu Z, Qin E, Liu S, Yang T, Xiang N, Kudrna D, Chen Y, Lee S, Li G, Wing RA, Liu J, Xiong H, Xia C, Xing Y, Zhang J, Qin R. Wu Z, et al. Among authors: zhang j. Plant Biotechnol J. 2021 Sep;19(9):1725-1742. doi: 10.1111/pbi.13586. Epub 2021 Apr 8. Plant Biotechnol J. 2021. PMID: 33768699 Free PMC article.
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