Tseng E - Search Results

1

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.

Pardo-Palacios FJ, Arzalluz-Luque A, Kondratova L, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A. Pardo-Palacios FJ, et al. Among authors: tseng e. Nat Methods. 2024 May;21(5):793-797. doi: 10.1038/s41592-024-02229-2. Epub 2024 Mar 20. Nat Methods. 2024. PMID: 38509328 Free PMC article.

2

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.

Pardo-Palacios FJ, Arzalluz-Luque A, Kondratova L, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A. Pardo-Palacios FJ, et al. Among authors: tseng e. bioRxiv [Preprint]. 2023 Jun 3:2023.05.17.541248. doi: 10.1101/2023.05.17.541248. bioRxiv. 2023. PMID: 37398077 Free PMC article. Updated. Preprint.

3

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms.

Sheynkman GM, Tuttle KS, Laval F, Tseng E, Underwood JG, Yu L, Dong D, Smith ML, Sebra R, Willems L, Hao T, Calderwood MA, Hill DE, Vidal M. Sheynkman GM, et al. Among authors: tseng e. Nat Commun. 2020 May 11;11(1):2326. doi: 10.1038/s41467-020-16174-z. Nat Commun. 2020. PMID: 32393825 Free PMC article.

4

Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia.

Tian L, Shao Y, Nance S, Dang J, Xu B, Ma X, Li Y, Ju B, Dong L, Newman S, Zhou X, Schreiner P, Tseng E, Hon T, Ashby M, Li C, Easton J, Gruber TA, Zhang J. Tian L, et al. Among authors: tseng e. Nat Commun. 2019 Jun 26;10(1):2789. doi: 10.1038/s41467-019-10637-8. Nat Commun. 2019. PMID: 31243274 Free PMC article.

5

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.

Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D. Wang B, et al. Among authors: tseng e. Nat Commun. 2016 Jun 24;7:11708. doi: 10.1038/ncomms11708. Nat Commun. 2016. PMID: 27339440 Free PMC article.

6

Long-read sequencing of chicken transcripts and identification of new transcript isoforms.

Thomas S, Underwood JG, Tseng E, Holloway AK; Bench To Basinet CvDC Informatics Subcommittee. Thomas S, et al. Among authors: tseng e. PLoS One. 2014 Apr 15;9(4):e94650. doi: 10.1371/journal.pone.0094650. eCollection 2014. PLoS One. 2014. PMID: 24736250 Free PMC article.

7

Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos).

Tseng E, Underwood JG, Evans Hutzenbiler BD, Trojahn S, Kingham B, Shevchenko O, Bernberg E, Vierra M, Robbins CT, Jansen HT, Kelley JL. Tseng E, et al. G3 (Bethesda). 2022 Mar 4;12(3):jkab422. doi: 10.1093/g3journal/jkab422. G3 (Bethesda). 2022. PMID: 35100340 Free PMC article.

8

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.

Bickhart DM, Kolmogorov M, Tseng E, Portik DM, Korobeynikov A, Tolstoganov I, Uritskiy G, Liachko I, Sullivan ST, Shin SB, Zorea A, Andreu VP, Panke-Buisse K, Medema MH, Mizrahi I, Pevzner PA, Smith TPL. Bickhart DM, et al. Among authors: tseng e. Nat Biotechnol. 2022 May;40(5):711-719. doi: 10.1038/s41587-021-01130-z. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980911

9

The Landscape of SNCA Transcripts Across Synucleinopathies: New Insights From Long Reads Sequencing Analysis.

Tseng E, Rowell WJ, Glenn OC, Hon T, Barrera J, Kujawa S, Chiba-Falek O. Tseng E, et al. Front Genet. 2019 Jul 9;10:584. doi: 10.3389/fgene.2019.00584. eCollection 2019. Front Genet. 2019. PMID: 31338105 Free PMC article.

10

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.

Low WY, Tearle R, Liu R, Koren S, Rhie A, Bickhart DM, Rosen BD, Kronenberg ZN, Kingan SB, Tseng E, Thibaud-Nissen F, Martin FJ, Billis K, Ghurye J, Hastie AR, Lee J, Pang AWC, Heaton MP, Phillippy AM, Hiendleder S, Smith TPL, Williams JL. Low WY, et al. Among authors: tseng e. Nat Commun. 2020 Apr 29;11(1):2071. doi: 10.1038/s41467-020-15848-y. Nat Commun. 2020. PMID: 32350247 Free PMC article.

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