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Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations.
Klvana M, Pavlova M, Koudelakova T, Chaloupkova R, Dvorak P, Prokop Z, Stsiapanava A, Kuty M, Kuta-Smatanova I, Dohnalek J, Kulhanek P, Wade RC, Damborsky J. Klvana M, et al. Among authors: kulhanek p. J Mol Biol. 2009 Oct 9;392(5):1339-56. doi: 10.1016/j.jmb.2009.06.076. Epub 2009 Jul 3. J Mol Biol. 2009. PMID: 19577578
Bending of Canonical and G/T Mismatched DNAs.
Bouchal T, Durník I, Kulhánek P. Bouchal T, et al. Among authors: kulhanek p. J Chem Inf Model. 2021 Dec 27;61(12):6000-6011. doi: 10.1021/acs.jcim.1c00731. Epub 2021 Nov 15. J Chem Inf Model. 2021. PMID: 34779609
Importance of base-pair opening for mismatch recognition.
Bouchal T, Durník I, Illík V, Réblová K, Kulhánek P. Bouchal T, et al. Among authors: kulhanek p. Nucleic Acids Res. 2020 Nov 18;48(20):11322-11334. doi: 10.1093/nar/gkaa896. Nucleic Acids Res. 2020. PMID: 33080020 Free PMC article.
Bending of DNA duplexes with mutation motifs.
Růžička M, Souček P, Kulhánek P, Radová L, Fajkusová L, Réblová K. Růžička M, et al. Among authors: kulhanek p. DNA Res. 2019 Aug 1;26(4):341-352. doi: 10.1093/dnares/dsz013. DNA Res. 2019. PMID: 31230075 Free PMC article.
39 results