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A novel sorting method for the enrichment of early human spermatocytes from clinical biopsies.
F S Sci. 2024 May;5(2):130-140. doi: 10.1016/j.xfss.2024.02.002. Epub 2024 Feb 17.
F S Sci. 2024.
PMID: 38369016
TKSM: highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator.
Karaoğlanoğlu F, Orabi B, Flannigan R, Chauve C, Hach F.
Karaoğlanoğlu F, et al.
Bioinformatics. 2024 Feb 1;40(2):btae051. doi: 10.1093/bioinformatics/btae051.
Bioinformatics. 2024.
PMID: 38273664
Free PMC article.
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Genion, an accurate tool to detect gene fusion from long transcriptomics reads.
Karaoglanoglu F, Chauve C, Hach F.
Karaoglanoglu F, et al.
BMC Genomics. 2022 Feb 14;23(1):129. doi: 10.1186/s12864-022-08339-5.
BMC Genomics. 2022.
PMID: 35164688
Free PMC article.
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An androgen receptor switch underlies lineage infidelity in treatment-resistant prostate cancer.
Davies A, Nouruzi S, Ganguli D, Namekawa T, Thaper D, Linder S, Karaoğlanoğlu F, Omur ME, Kim S, Kobelev M, Kumar S, Sivak O, Bostock C, Bishop J, Hoogstraat M, Talal A, Stelloo S, van der Poel H, Bergman AM, Ahmed M, Fazli L, Huang H, Tilley W, Goodrich D, Feng FY, Gleave M, He HH, Hach F, Zwart W, Beltran H, Selth L, Zoubeidi A.
Davies A, et al. Among authors: karaoglanoglu f.
Nat Cell Biol. 2021 Sep;23(9):1023-1034. doi: 10.1038/s41556-021-00743-5. Epub 2021 Sep 6.
Nat Cell Biol. 2021.
PMID: 34489572
Free PMC article.
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VALOR2: characterization of large-scale structural variants using linked-reads.
Karaoğlanoğlu F, Ricketts C, Ebren E, Rasekh ME, Hajirasouliha I, Alkan C.
Karaoğlanoğlu F, et al.
Genome Biol. 2020 Mar 19;21(1):72. doi: 10.1186/s13059-020-01975-8.
Genome Biol. 2020.
PMID: 32192518
Free PMC article.
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