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C4 cereal and biofuel crop microbiomes.
Zai X, Cordovez V, Zhu F, Zhao M, Diao X, Zhang F, Raaijmakers JM, Song C. Zai X, et al. Among authors: raaijmakers jm. Trends Microbiol. 2024 May 20:S0966-842X(24)00093-3. doi: 10.1016/j.tim.2024.04.008. Online ahead of print. Trends Microbiol. 2024. PMID: 38772810 Review.
baseLess: lightweight detection of sequences in raw MinION data.
Noordijk B, Nijland R, Carrion VJ, Raaijmakers JM, de Ridder D, de Lannoy C. Noordijk B, et al. Among authors: raaijmakers jm. Bioinform Adv. 2023 Feb 15;3(1):vbad017. doi: 10.1093/bioadv/vbad017. eCollection 2023. Bioinform Adv. 2023. PMID: 36818730 Free PMC article.
Editorial.
Hill JE, Raaijmakers JM, Smidt H. Hill JE, et al. Among authors: raaijmakers jm. ISME Commun. 2021 Apr 14;1(1):10. doi: 10.1038/s43705-021-00013-3. ISME Commun. 2021. PMID: 37938246 Free PMC article. No abstract available.
The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection.
Kawa D, Thiombiano B, Shimels MZ, Taylor T, Walmsley A, Vahldick HE, Rybka D, Leite MFA, Musa Z, Bucksch A, Dini-Andreote F, Schilder M, Chen AJ, Daksa J, Etalo DW, Tessema T, Kuramae EE, Raaijmakers JM, Bouwmeester H, Brady SM. Kawa D, et al. Among authors: raaijmakers jm. Cell Rep. 2024 Apr 23;43(4):113971. doi: 10.1016/j.celrep.2024.113971. Epub 2024 Mar 26. Cell Rep. 2024. PMID: 38537644 Free PMC article.
bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria.
Guerrero-Egido G, Pintado A, Bretscher KM, Arias-Giraldo LM, Paulson JN, Spaink HP, Claessen D, Ramos C, Cazorla FM, Medema MH, Raaijmakers JM, Carrión VJ. Guerrero-Egido G, et al. Among authors: raaijmakers jm. Nat Commun. 2024 Mar 7;15(1):2072. doi: 10.1038/s41467-024-46302-y. Nat Commun. 2024. PMID: 38453959 Free PMC article.
Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness.
Costa LSAS, de Faria MR, Chiaramonte JB, Mendes LW, Sepo E, de Hollander M, Fernandes JMC, Carrión VJ, Bettiol W, Mauchline TH, Raaijmakers JM, Mendes R. Costa LSAS, et al. Among authors: raaijmakers jm. Environ Microbiome. 2023 Dec 5;18(1):85. doi: 10.1186/s40793-023-00529-2. Environ Microbiome. 2023. PMID: 38053159 Free PMC article.
157 results