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What's next? Forecasting scientific research trends.
Ofer D, Kaufman H, Linial M. Ofer D, et al. Among authors: linial m. Heliyon. 2023 Dec 15;10(1):e23781. doi: 10.1016/j.heliyon.2023.e23781. eCollection 2024 Jan 15. Heliyon. 2023. PMID: 38223716 Free PMC article.
NeuroPID: a classifier of neuropeptide precursors.
Karsenty S, Rappoport N, Ofer D, Zair A, Linial M. Karsenty S, et al. Among authors: linial m. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W182-6. doi: 10.1093/nar/gku363. Epub 2014 May 3. Nucleic Acids Res. 2014. PMID: 24792159 Free PMC article.
An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehma… See abstract for full author list ➔ Jiang Y, et al. Among authors: linial m. Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6. Genome Biol. 2016. PMID: 27604469 Free PMC article.
The language of proteins: NLP, machine learning & protein sequences.
Ofer D, Brandes N, Linial M. Ofer D, et al. Among authors: linial m. Comput Struct Biotechnol J. 2021 Mar 25;19:1750-1758. doi: 10.1016/j.csbj.2021.03.022. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 33897979 Free PMC article. Review.
309 results