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Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies.
Nat Comput Sci. 2021 Jan;1(1):33-41. doi: 10.1038/s43588-020-00007-6. Epub 2021 Jan 14.
Nat Comput Sci. 2021.
PMID: 38217166
Review.
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.
Sadegh S, Matschinske J, Blumenthal DB, Galindez G, Kacprowski T, List M, Nasirigerdeh R, Oubounyt M, Pichlmair A, Rose TD, Salgado-Albarrán M, Späth J, Stukalov A, Wenke NK, Yuan K, Pauling JK, Baumbach J.
Sadegh S, et al. Among authors: rose td.
Nat Commun. 2020 Jul 14;11(1):3518. doi: 10.1038/s41467-020-17189-2.
Nat Commun. 2020.
PMID: 32665542
Free PMC article.
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Investigating Global Lipidome Alterations with the Lipid Network Explorer.
Köhler N, Rose TD, Falk L, Pauling JK.
Köhler N, et al. Among authors: rose td.
Metabolites. 2021 Jul 28;11(8):488. doi: 10.3390/metabo11080488.
Metabolites. 2021.
PMID: 34436429
Free PMC article.
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MoSBi: Automated signature mining for molecular stratification and subtyping.
Rose TD, Bechtler T, Ciora OA, Anh Lilian Le K, Molnar F, Köhler N, Baumbach J, Röttger R, Pauling JK.
Rose TD, et al.
Proc Natl Acad Sci U S A. 2022 Apr 19;119(16):e2118210119. doi: 10.1073/pnas.2118210119. Epub 2022 Apr 11.
Proc Natl Acad Sci U S A. 2022.
PMID: 35412913
Free PMC article.
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Lipid network and moiety analysis for revealing enzymatic dysregulation and mechanistic alterations from lipidomics data.
Rose TD, Köhler N, Falk L, Klischat L, Lazareva OE, Pauling JK.
Rose TD, et al.
Brief Bioinform. 2023 Jan 19;24(1):bbac572. doi: 10.1093/bib/bbac572.
Brief Bioinform. 2023.
PMID: 36592059
Free PMC article.
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Nonalcoholic fatty liver disease stratification by liver lipidomics.
Vvedenskaya O, Rose TD, Knittelfelder O, Palladini A, Wodke JAH, Schuhmann K, Ackerman JM, Wang Y, Has C, Brosch M, Thangapandi VR, Buch S, Züllig T, Hartler J, Köfeler HC, Röcken C, Coskun Ü, Klipp E, von Schoenfels W, Gross J, Schafmayer C, Hampe J, Pauling JK, Shevchenko A.
Vvedenskaya O, et al. Among authors: rose td.
J Lipid Res. 2021;62:100104. doi: 10.1016/j.jlr.2021.100104. Epub 2021 Aug 10.
J Lipid Res. 2021.
PMID: 34384788
Free PMC article.
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Kupffer cells are protective in alcoholic steatosis.
Köhler N, Höring M, Czepukojc B, Rose TD, Buechler C, Kröhler T, Haybaeck J, Liebisch G, Pauling JK, Kessler SM, Kiemer AK.
Köhler N, et al. Among authors: rose td.
Biochim Biophys Acta Mol Basis Dis. 2022 Jun 1;1868(6):166398. doi: 10.1016/j.bbadis.2022.166398. Epub 2022 Mar 19.
Biochim Biophys Acta Mol Basis Dis. 2022.
PMID: 35318125
Free article.
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