Akalin A - Search Results

1

Herpesviruses mimic zygotic genome activation to promote viral replication.

Full F, Walter S, Neugebauer E, Tan J, Drayman N, Franke V, Tay S, Landthaler M, Akalin A, Ensser A, Wyler E. Full F, et al. Among authors: akalin a. Res Sq [Preprint]. 2023 Dec 13:rs.3.rs-3125635. doi: 10.21203/rs.3.rs-3125635/v1. Res Sq. 2023. PMID: 38168299 Free PMC article. Preprint.

2

Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection.

Wyler E, Menegatti J, Franke V, Kocks C, Boltengagen A, Hennig T, Theil K, Rutkowski A, Ferrai C, Baer L, Kermas L, Friedel C, Rajewsky N, Akalin A, Dölken L, Grässer F, Landthaler M. Wyler E, et al. Among authors: akalin a. Genome Biol. 2017 Oct 31;18(1):209. doi: 10.1186/s13059-017-1329-5. Genome Biol. 2017. PMID: 29089033 Free PMC article.

3

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program.

Wyler E, Franke V, Menegatti J, Kocks C, Boltengagen A, Praktiknjo S, Walch-Rückheim B, Bosse J, Rajewsky N, Grässer F, Akalin A, Landthaler M. Wyler E, et al. Among authors: akalin a. Nat Commun. 2019 Oct 25;10(1):4878. doi: 10.1038/s41467-019-12894-z. Nat Commun. 2019. PMID: 31653857 Free PMC article.

4

Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy.

Wyler E, Mösbauer K, Franke V, Diag A, Gottula LT, Arsiè R, Klironomos F, Koppstein D, Hönzke K, Ayoub S, Buccitelli C, Hoffmann K, Richter A, Legnini I, Ivanov A, Mari T, Del Giudice S, Papies J, Praktiknjo S, Meyer TF, Müller MA, Niemeyer D, Hocke A, Selbach M, Akalin A, Rajewsky N, Drosten C, Landthaler M. Wyler E, et al. Among authors: akalin a. iScience. 2021 Mar 19;24(3):102151. doi: 10.1016/j.isci.2021.102151. Epub 2021 Feb 6. iScience. 2021. PMID: 33585804 Free PMC article.

5

DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.

Blin K, Dieterich C, Wurmus R, Rajewsky N, Landthaler M, Akalin A. Blin K, et al. Among authors: akalin a. Nucleic Acids Res. 2015 Jan;43(Database issue):D160-7. doi: 10.1093/nar/gku1180. Epub 2014 Nov 21. Nucleic Acids Res. 2015. PMID: 25416797 Free PMC article.

6

Genomation: a toolkit to summarize, annotate and visualize genomic intervals.

Akalin A, Franke V, Vlahoviček K, Mason CE, Schübeler D. Akalin A, et al. Bioinformatics. 2015 Apr 1;31(7):1127-9. doi: 10.1093/bioinformatics/btu775. Epub 2014 Nov 21. Bioinformatics. 2015. PMID: 25417204

7

Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.

Ciolli Mattioli C, Rom A, Franke V, Imami K, Arrey G, Terne M, Woehler A, Akalin A, Ulitsky I, Chekulaeva M. Ciolli Mattioli C, et al. Among authors: akalin a. Nucleic Acids Res. 2019 Mar 18;47(5):2560-2573. doi: 10.1093/nar/gky1270. Nucleic Acids Res. 2019. PMID: 30590745 Free PMC article.

8

HOT or not: examining the basis of high-occupancy target regions.

Wreczycka K, Franke V, Uyar B, Wurmus R, Bulut S, Tursun B, Akalin A. Wreczycka K, et al. Among authors: akalin a. Nucleic Acids Res. 2019 Jun 20;47(11):5735-5745. doi: 10.1093/nar/gkz460. Nucleic Acids Res. 2019. PMID: 31114922 Free PMC article.

9

Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells.

Kim M, Franke V, Brandt B, Lowenstein ED, Schöwel V, Spuler S, Akalin A, Birchmeier C. Kim M, et al. Among authors: akalin a. Nat Commun. 2020 Dec 11;11(1):6375. doi: 10.1038/s41467-020-20064-9. Nat Commun. 2020. PMID: 33311457 Free PMC article.

10

Identifying tumor cells at the single-cell level using machine learning.

Dohmen J, Baranovskii A, Ronen J, Uyar B, Franke V, Akalin A. Dohmen J, et al. Among authors: akalin a. Genome Biol. 2022 May 30;23(1):123. doi: 10.1186/s13059-022-02683-1. Genome Biol. 2022. PMID: 35637521 Free PMC article.

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