Campos TL - Search Results

1

'Bingo'-a large language model- and graph neural network-based workflow for the prediction of essential genes from protein data.

Ma J, Song J, Young ND, Chang BCH, Korhonen PK, Campos TL, Liu H, Gasser RB. Ma J, et al. Among authors: campos tl. Brief Bioinform. 2023 Nov 22;25(1):bbad472. doi: 10.1093/bib/bbad472. Brief Bioinform. 2023. PMID: 38152979 Free PMC article.

2

An Evaluation of Machine Learning Approaches for the Prediction of Essential Genes in Eukaryotes Using Protein Sequence-Derived Features.

Campos TL, Korhonen PK, Gasser RB, Young ND. Campos TL, et al. Comput Struct Biotechnol J. 2019 Jun 8;17:785-796. doi: 10.1016/j.csbj.2019.05.008. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 31312416 Free PMC article.

3

Predicting gene essentiality in Caenorhabditis elegans by feature engineering and machine-learning.

Campos TL, Korhonen PK, Sternberg PW, Gasser RB, Young ND. Campos TL, et al. Comput Struct Biotechnol J. 2020 May 15;18:1093-1102. doi: 10.1016/j.csbj.2020.05.008. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32489524 Free PMC article.

4

OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.

Gurumayum S, Jiang P, Hao X, Campos TL, Young ND, Korhonen PK, Gasser RB, Bork P, Zhao XM, He LJ, Chen WH. Gurumayum S, et al. Among authors: campos tl. Nucleic Acids Res. 2021 Jan 8;49(D1):D998-D1003. doi: 10.1093/nar/gkaa884. Nucleic Acids Res. 2021. PMID: 33084874 Free PMC article.

5

Combined use of feature engineering and machine-learning to predict essential genes in Drosophila melanogaster.

Campos TL, Korhonen PK, Hofmann A, Gasser RB, Young ND. Campos TL, et al. NAR Genom Bioinform. 2020 Jul 22;2(3):lqaa051. doi: 10.1093/nargab/lqaa051. eCollection 2020 Sep. NAR Genom Bioinform. 2020. PMID: 33575603 Free PMC article.

6

Cross-Predicting Essential Genes between Two Model Eukaryotic Species Using Machine Learning.

Campos TL, Korhonen PK, Young ND. Campos TL, et al. Int J Mol Sci. 2021 May 11;22(10):5056. doi: 10.3390/ijms22105056. Int J Mol Sci. 2021. PMID: 34064595 Free PMC article.

7

Harnessing model organism genomics to underpin the machine learning-based prediction of essential genes in eukaryotes - Biotechnological implications.

Campos TL, Korhonen PK, Hofmann A, Gasser RB, Young ND. Campos TL, et al. Biotechnol Adv. 2022 Jan-Feb;54:107822. doi: 10.1016/j.biotechadv.2021.107822. Epub 2021 Aug 27. Biotechnol Adv. 2022. PMID: 34461202 Free article. Review.

8

Analysis of Haemonchus embryos at single cell resolution identifies two eukaryotic elongation factors as intervention target candidates.

Korhonen PK, Wang T, Young ND, Byrne JJ, Campos TL, Chang BCH, Taki AC, Gasser RB. Korhonen PK, et al. Among authors: campos tl. Comput Struct Biotechnol J. 2024 Jan 17;23:1026-1035. doi: 10.1016/j.csbj.2024.01.008. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38435301 Free PMC article.

9

Comparative Genomics of Acinetobacter baumannii Clinical Strains From Brazil Reveals Polyclonal Dissemination and Selective Exchange of Mobile Genetic Elements Associated With Resistance Genes.

Leal NC, Campos TL, Rezende AM, Docena C, Mendes-Marques CL, de Sá Cavalcanti FL, Wallau GL, Rocha IV, Cavalcanti CLB, Veras DL, Alves LR, Andrade-Figueiredo M, de Barros MPS, de Almeida AMP, de Morais MMC, Leal-Balbino TC, Xavier DE, de-Melo-Neto OP. Leal NC, et al. Among authors: campos tl. Front Microbiol. 2020 Jun 17;11:1176. doi: 10.3389/fmicb.2020.01176. eCollection 2020. Front Microbiol. 2020. PMID: 32655514 Free PMC article.

10

Extracellular vesicles produced by the protozoan parasite Trichomonas vaginalis contain a preferential cargo of tRNA-derived small RNAs.

Artuyants A, Campos TL, Rai AK, Johnson PJ, Dauros-Singorenko P, Phillips A, Simoes-Barbosa A. Artuyants A, et al. Among authors: campos tl. Int J Parasitol. 2020 Dec;50(14):1145-1155. doi: 10.1016/j.ijpara.2020.07.003. Epub 2020 Aug 18. Int J Parasitol. 2020. PMID: 32822680

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