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Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments.
Bioinformatics. 2023 Dec 1;39(12):btad739. doi: 10.1093/bioinformatics/btad739.
Bioinformatics. 2023.
PMID: 38060268
Free PMC article.
Multisite phosphorylation and binding alter conformational dynamics of the 4E-BP2 protein.
Smyth S, Zhang Z, Bah A, Tsangaris TE, Dawson J, Forman-Kay JD, Gradinaru CC.
Smyth S, et al. Among authors: tsangaris te.
Biophys J. 2022 Aug 16;121(16):3049-3060. doi: 10.1016/j.bpj.2022.07.015. Epub 2022 Jul 15.
Biophys J. 2022.
PMID: 35841142
Free PMC article.
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Delineating Structural Propensities of the 4E-BP2 Protein via Integrative Modeling and Clustering.
Tsangaris TE, Smyth S, Gomes GW, Liu ZH, Milchberg M, Bah A, Wasney GA, Forman-Kay JD, Gradinaru CC.
Tsangaris TE, et al.
J Phys Chem B. 2023 Aug 31;127(34):7472-7486. doi: 10.1021/acs.jpcb.3c04052. Epub 2023 Aug 18.
J Phys Chem B. 2023.
PMID: 37595014
Free PMC article.
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PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins.
Ghafouri H, Lazar T, Del Conte A, Tenorio Ku LG; PED Consortium; Tompa P, Tosatto SCE, Monzon AM.
Ghafouri H, et al.
Nucleic Acids Res. 2024 Jan 5;52(D1):D536-D544. doi: 10.1093/nar/gkad947.
Nucleic Acids Res. 2024.
PMID: 37904608
Free PMC article.
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Local Disordered Region Sampling (LDRS) for Ensemble Modeling of Proteins with Experimentally Undetermined or Low Confidence Prediction Segments.
Liu ZH, Teixeira JMC, Zhang O, Tsangaris TE, Li J, Gradinaru CC, Head-Gordon T, Forman-Kay JD.
Liu ZH, et al. Among authors: tsangaris te.
bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550520. doi: 10.1101/2023.07.25.550520.
bioRxiv. 2023.
PMID: 37546943
Free PMC article.
Updated.
Preprint.
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