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Inferred regulons are consistent with regulator binding sequences in E. coli.
Qiu S, Wan X, Liang Y, Lamoureux CR, Akbari A, Palsson BO, Zielinski DC. Qiu S, et al. Among authors: zielinski dc. PLoS Comput Biol. 2024 Jan 22;20(1):e1011824. doi: 10.1371/journal.pcbi.1011824. eCollection 2024 Jan. PLoS Comput Biol. 2024. PMID: 38252668 Free PMC article.
Escherichia coli non-coding regulatory regions are highly conserved.
Lamoureux CR, Phaneuf PV, Palsson BO, Zielinski DC. Lamoureux CR, et al. Among authors: zielinski dc. NAR Genom Bioinform. 2024 May 20;6(2):lqae041. doi: 10.1093/nargab/lqae041. eCollection 2024 Jun. NAR Genom Bioinform. 2024. PMID: 38774514 Free PMC article.
A multi-scale expression and regulation knowledge base for Escherichia coli.
Lamoureux CR, Decker KT, Sastry AV, Rychel K, Gao Y, McConn JL, Zielinski DC, Palsson BO. Lamoureux CR, et al. Among authors: zielinski dc. Nucleic Acids Res. 2023 Oct 27;51(19):10176-10193. doi: 10.1093/nar/gkad750. Nucleic Acids Res. 2023. PMID: 37713610 Free PMC article.
Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins.
Hirose Y, Poudel S, Sastry AV, Rychel K, Lamoureux CR, Szubin R, Zielinski DC, Lim HG, Menon ND, Bergsten H, Uchiyama S, Hanada T, Kawabata S, Palsson BO, Nizet V. Hirose Y, et al. Among authors: zielinski dc. mSystems. 2023 Jun 29;8(3):e0024723. doi: 10.1128/msystems.00247-23. Epub 2023 Jun 6. mSystems. 2023. PMID: 37278526 Free PMC article.
38 results