Shaker B - Search Results

1

A multi-layered network model identifies Akt1 as a common modulator of neurodegeneration.

Na D, Lim DH, Hong JS, Lee HM, Cho D, Yu MS, Shaker B, Ren J, Lee B, Song JG, Oh Y, Lee K, Oh KS, Lee MY, Choi MS, Choi HS, Kim YH, Bui JM, Lee K, Kim HW, Lee YS, Gsponer J. Na D, et al. Among authors: shaker b. Mol Syst Biol. 2023 Dec 6;19(12):e11801. doi: 10.15252/msb.202311801. Epub 2023 Nov 20. Mol Syst Biol. 2023. PMID: 37984409 Free PMC article.

2

LightBBB: computational prediction model of blood-brain-barrier penetration based on LightGBM.

Shaker B, Yu MS, Song JS, Ahn S, Ryu JY, Oh KS, Na D. Shaker B, et al. Bioinformatics. 2021 May 23;37(8):1135-1139. doi: 10.1093/bioinformatics/btaa918. Bioinformatics. 2021. PMID: 33112379

3

A machine learning-based quantitative model (LogBB_Pred) to predict the blood-brain barrier permeability (logBB value) of drug compounds.

Shaker B, Lee J, Lee Y, Yu MS, Lee HM, Lee E, Kang HC, Oh KS, Kim HW, Na D. Shaker B, et al. Bioinformatics. 2023 Oct 3;39(10):btad577. doi: 10.1093/bioinformatics/btad577. Bioinformatics. 2023. PMID: 37713469 Free PMC article.

4

Computational Design of a Multi-Epitope Vaccine Against Porphyromonas gingivalis.

Shaker B, Ahmad S, Shen J, Kim HW, Na D. Shaker B, et al. Front Immunol. 2022 Feb 18;13:806825. doi: 10.3389/fimmu.2022.806825. eCollection 2022. Front Immunol. 2022. PMID: 35250977 Free PMC article.

5

User guide for the discovery of potential drugs via protein structure prediction and ligand docking simulation.

Shaker B, Yu MS, Lee J, Lee Y, Jung C, Na D. Shaker B, et al. J Microbiol. 2020 Mar;58(3):235-244. doi: 10.1007/s12275-020-9563-z. Epub 2020 Feb 27. J Microbiol. 2020. PMID: 32108318

6

Rational Drug Design for Pseudomonas aeruginosa PqsA Enzyme: An in silico Guided Study to Block Biofilm Formation.

Shaker B, Ahmad S, Thai TD, Eyun SI, Na D. Shaker B, et al. Front Mol Biosci. 2020 Oct 15;7:577316. doi: 10.3389/fmolb.2020.577316. eCollection 2020. Front Mol Biosci. 2020. PMID: 33195420 Free PMC article.

7

In silico methods and tools for drug discovery.

Shaker B, Ahmad S, Lee J, Jung C, Na D. Shaker B, et al. Comput Biol Med. 2021 Oct;137:104851. doi: 10.1016/j.compbiomed.2021.104851. Epub 2021 Sep 8. Comput Biol Med. 2021. PMID: 34520990 Review.

8

Genotypes and phenotypes of DNM1 encephalopathy.

Kim J, Teng LY, Shaker B, Na D, Koh HY, Kwon SS, Lee JS, Kim HD, Kang HC, Kim SH. Kim J, et al. Among authors: shaker b. J Med Genet. 2023 Nov;60(11):1076-1083. doi: 10.1136/jmg-2023-109233. Epub 2023 May 29. J Med Genet. 2023. PMID: 37248033

9

Towards a novel peptide vaccine for Middle East respiratory syndrome coronavirus and its possible use against pandemic COVID-19.

Khan S, Shaker B, Ahmad S, Abbasi SW, Arshad M, Haleem A, Ismail S, Zaib A, Sajjad W. Khan S, et al. Among authors: shaker b. J Mol Liq. 2021 Feb 15;324:114706. doi: 10.1016/j.molliq.2020.114706. Epub 2020 Nov 6. J Mol Liq. 2021. PMID: 33173250 Free PMC article.

10

Identification of Novel Genes and Pathways of Ovarian Cancer Using a Comprehensive Bioinformatic Framework.

Rashid H, Ullah A, Ahmad S, Aljahdali SM, Waheed Y, Shaker B, Al-Harbi AI, Alabbas AB, Alqahtani SM, Akiel MA, Irfan M. Rashid H, et al. Among authors: shaker b. Appl Biochem Biotechnol. 2023 Aug 24. doi: 10.1007/s12010-023-04702-8. Online ahead of print. Appl Biochem Biotechnol. 2023. PMID: 37615851

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