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Metabolomic, photoprotective, and photosynthetic acclimatory responses to post-flowering drought in sorghum.
Baker CR, Patel-Tupper D, Cole BJ, Ching LG, Dautermann O, Kelikian AC, Allison C, Pedraza J, Sievert J, Bilbao A, Lee JY, Kim YM, Kyle JE, Bloodsworth KJ, Paurus V, Hixson KK, Hutmacher R, Dahlberg J, Lemaux PG, Niyogi KK. Baker CR, et al. Among authors: bilbao a. Plant Direct. 2023 Nov 13;7(11):e545. doi: 10.1002/pld3.545. eCollection 2023 Nov. Plant Direct. 2023. PMID: 37965197 Free PMC article.
AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry-mass spectrometry.
Lee JY, Bilbao A, Conant CR, Bloodsworth KJ, Orton DJ, Zhou M, Wilson JW, Zheng X, Webb IK, Li A, Hixson KK, Fjeldsted JC, Ibrahim YM, Payne SH, Jansson C, Smith RD, Metz TO. Lee JY, et al. Among authors: bilbao a. Bioinformatics. 2021 Nov 18;37(22):4193-4201. doi: 10.1093/bioinformatics/btab429. Bioinformatics. 2021. PMID: 34145874 Free PMC article.
Mapping microhabitats of lignocellulose decomposition by a microbial consortium.
Veličković M, Wu R, Gao Y, Thairu MW, Veličković D, Munoz N, Clendinen CS, Bilbao A, Chu RK, Lalli PM, Zemaitis K, Nicora CD, Kyle JE, Orton D, Williams S, Zhu Y, Zhao R, Monroe ME, Moore RJ, Webb-Robertson BM, Bramer LM, Currie CR, Piehowski PD, Burnum-Johnson KE. Veličković M, et al. Among authors: bilbao a. Nat Chem Biol. 2024 Feb 1. doi: 10.1038/s41589-023-01536-7. Online ahead of print. Nat Chem Biol. 2024. PMID: 38302607
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.
Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, Fasani RA, Tsalenko A, Tanjore D, Gardner J, Smith RD, Michener JK, Gladden JM, Baker ES, Petzold CJ, Kim YM, Apffel A, Magnuson JK, Burnum-Johnson KE. Bilbao A, et al. Nat Commun. 2023 Apr 28;14(1):2461. doi: 10.1038/s41467-023-37031-9. Nat Commun. 2023. PMID: 37117207 Free PMC article.
High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440.
Gao Y, Fillmore TL, Munoz N, Bentley GJ, Johnson CW, Kim J, Meadows JA, Zucker JD, Burnet MC, Lipton AK, Bilbao A, Orton DJ, Kim YM, Moore RJ, Robinson EW, Baker SE, Webb-Robertson BM, Guss AM, Gladden JM, Beckham GT, Magnuson JK, Burnum-Johnson KE. Gao Y, et al. Among authors: bilbao a. Front Bioeng Biotechnol. 2020 Dec 2;8:603488. doi: 10.3389/fbioe.2020.603488. eCollection 2020. Front Bioeng Biotechnol. 2020. PMID: 33425868 Free PMC article.
351 results